CB305068

Overview
NameCB305068
Unique NameCB305068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATV_NPVAP (Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = -2
Query:  317 EDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 583
            E++L+  + +V P+ VA +  D    YK G+     C N  +  NHAV+ VGYGVE+G+P+W++KN+WG +WG+ GYF+++   N CGI
Sbjct:  230 EEKLKDLLRIVGPIPVAIDASD-IVGYKRGIIRY--CENHGL--NHAVLLVGYGVENGIPFWILKNTWGADWGEQGYFRVQQNINACGI 313          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATV_NPVAC (Viral cathepsin OS=Autographa californica nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 41/110 (37.27%), Postives = 64/110 (58.18%), Query Frame = -2
Query:  317 KFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 646
            + +S    VQV D        E++L+  + LV P+ +A +  D    YK G+     C N+ +  NHAV+ VGYGVE+ +PYW  KN+WG +WG+ G+F+++   N CG+
Sbjct:  208 RMNSNKFLVQVKDCYRYITVYEEKLKDLLRLVGPIPMAIDAADIVN-YKQGIIKY--CFNSGL--NHAVLLVGYGVENNIPYWTFKNTWGTDWGEDGFFRVQQNINACGM 312          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATC_MACFA (Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=CTSC PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = -2
Query:  305 PVSVAFEVVDGFRFYKSGVYSSTKCGN--TPMDV-NHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 547
            P++VAFEV D F  Y++G+Y  T   +   P ++ NHAV+ VGYG +   G+ YW++KNSWG +WG+ GYF++  G + C I + A
Sbjct:  369 PLAVAFEVYDDFLHYQNGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTSWGEDGYFRIRRGTDECAIESIA 454          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.856e-15
Identity = 46/122 (37.70%), Postives = 64/122 (52.46%), Query Frame = -2
Query:  293 KFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMG----KNMCGIATCASYPV 646
            +   +N  V +    N+    E  L  AV      +V       F+ Y+SGV+  T CG    ++NH VV VGYG E+G  YW++KNS G+ WG+ GY KM       + +CGIA  ASYP+
Sbjct:  242 RLKEDNKNVMIDGYENLPANDEAALMKAVAHQPVTAVVDSSSREFQLYESGVFDGT-CGT---NLNHGVVVVGYGTENGRDYWIVKNSRGDTWGEAGYMKMARNIANPRGLCGIAMRASYPL 359          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATV_NPVRO (Viral cathepsin OS=Rachiplusia ou multiple nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.856e-15
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = -2
Query:  317 VQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 622
            VQV D        E++L+  + LV P+ +A +  D    YK G+     C N+ +  NHAV+ VGYGVE+ +PYW  KN+WG +WG+ G+F+++   N CG+
Sbjct:  216 VQVKDCYRYITVYEEKLKDLLRLVGPIPMAIDAADIVN-YKQGIIKY--CFNSGL--NHAVLLVGYGVENNIPYWTFKNTWGTDWGEEGFFRVQQNINACGM 312          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.856e-15
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = -2
Query:  317 VQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 622
            V+V       L  E++L+  + +V P+ VA +  D    YK GV     C N  +  NHAV+ VGY VE+GVP+W++KN+WG +WG+ GYF+++   N CGI
Sbjct:  217 VKVKKCYRYVLMFEEKLKDLLRIVGPLPVAIDASDIVN-YKRGVIRY--CANHGL--NHAVLLVGYAVENGVPFWILKNTWGTDWGEQGYFRVQQNINACGI 313          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATL6_HUMAN (Putative cathepsin L-like protein 6 OS=Homo sapiens GN=CTSLL6 PE=5 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.856e-15
Identity = 49/105 (46.67%), Postives = 61/105 (58.10%), Query Frame = -2
Query:  290 EDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVE----DGVPYWLIKNSW-GENWGDHGYFKMEMGK-NMCGIATCASYPVV 583
            E +L  AV  V P+SVA       F+FYK G+Y   +C   P  ++HA++ VGY  E    D   YWL+KNS  G+NWG  GY KM   + N CGIAT ASYP V
Sbjct:  175 EKDLAKAVATVGPISVAAGASHVSFQFYKKGIYFEPRCD--PEGLDHAMLLVGYSYEGADSDNNKYWLVKNSSEGKNWGMDGYIKMAKDRRNNCGIATAASYPTV 277          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATV_NPVBM (Viral cathepsin OS=Bombyx mori nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15
Identity = 40/110 (36.36%), Postives = 65/110 (59.09%), Query Frame = -2
Query:  317 KFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 646
            + +S    VQV D     +  E++L+  + LV P+ +A +  D    YK G+     C ++ +  NHAV+ VGYGVE+ +PYW  KN+WG +WG+ G+F+++   N CG+
Sbjct:  208 RMNSNKFLVQVKDCYRYIIVYEEKLKDLLPLVGPIPMAIDAADIVN-YKQGIIKY--CFDSGL--NHAVLLVGYGVENNIPYWTFKNTWGTDWGEDGFFRVQQNINACGM 312          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATC_RAT (Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Ctsc PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = -2
Query:  305 PVSVAFEVVDGFRFYKSGVYSSTKCGN--TPMDV-NHAVVAVGYGVED--GVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCA 547
            P++VAFEV D F  Y SG+Y  T   +   P ++ NHAV+ VGYG +   G+ YW++KNSWG  WG+ GYF++  G + C I + A
Sbjct:  368 PMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIA 453          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATB_RAT (Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  317 AEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGI 586
            +E E+   +    PV  AF V   F  YKSGVY   + G+      HA+  +G+G+E+GVPYWL+ NSW  +WGD+G+FK+  G+N CGI
Sbjct:  235 SEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKH-EAGDVMG--GHAIRILGWGIENGVPYWLVANSWNVDWGDNGFFKILRGENHCGI 321          
The following BLAST results are available for this feature:
BLAST of CB305068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
CATV_NPVAP2.187e-1542.70Viral cathepsin OS=Antheraea pernyi nuclear polyhe... [more]
CATV_NPVAC2.187e-1537.27Viral cathepsin OS=Autographa californica nuclear ... [more]
CATC_MACFA2.187e-1544.19Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=C... [more]
CPR4_ARATH2.856e-1537.70Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
CATV_NPVRO2.856e-1539.22Viral cathepsin OS=Rachiplusia ou multiple nucleop... [more]
CATV_NPVCD2.856e-1541.18Viral cathepsin OS=Choristoneura fumiferana defect... [more]
CATL6_HUMAN2.856e-1546.67Putative cathepsin L-like protein 6 OS=Homo sapien... [more]
CATV_NPVBM3.730e-1536.36Viral cathepsin OS=Bombyx mori nuclear polyhedrosi... [more]
CATC_RAT3.730e-1545.35Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Cts... [more]
CATB_RAT3.730e-1544.44Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_F06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_F06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305068 ID=CB305068; Name=CB305068; organism=Citrus sinensis; type=EST; length=647bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGCATTGACAAAATATATAT
AACATCGGTGGTGTCCTAGTCACAATGACTGTTTACATGGACATAGATCT
CAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTATTGTAGATTAT
ATGGACATTAATCTCCGAATTTATTTTGTACATAAAGCCAACCATTCTGC
TATCATGCTTGAGTGAAATAATATAAGTTTTATGAGCAAATGACTTGCTG
ATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTGGGT
ATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCATCTCCATCTTA
AAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCCA
ATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACGACAGCATGGT
TCACATCCATGGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCACTC
TTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACACTCACAGGTCG
AACAAGACCAACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAATGT
TGACTGAGTCCAGGACTTGGACGCCAACATTTTCAGATGAGAATTTG
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