CB305071

Overview
NameCB305071
Unique NameCB305071
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3781 contig Csv1_Contig3781:271..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305071 vs. ExPASy Swiss-Prot
Match: S15A3_HUMAN (Solute carrier family 15 member 3 OS=Homo sapiens GN=SLC15A3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.230e-11
Identity = 36/126 (28.57%), Postives = 67/126 (53.17%), Query Frame = -3
Query:  106 SGACP--GPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQV 477
            S  CP   P+P+    L+ GL L+ + A  +R    +FGADQ     + G+     FFNW+Y++     ++SL V+ ++Q ++S+  G  IP   + L+  +F   + ++    P GS ++S +++
Sbjct:  145 SAGCPRSSPSPYCAPVLYAGLLLLGLAASSVRSNLTSFGADQV---MDLGRDATRRFFNWFYWSINLGAVLSLLVVAFIQQNISFLLGYSIPVGCVGLAFFIFLFATPVFITKPPMGSQVSSMLKL 267          
BLAST of CB305071 vs. ExPASy Swiss-Prot
Match: S15A3_MOUSE (Solute carrier family 15 member 3 OS=Mus musculus GN=Slc15a3 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 43/173 (24.86%), Postives = 82/173 (47.40%), Query Frame = -3
Query:  106 GRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQD---------SGACPGP--TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQV 591
            GR+ T+   S+  +L    L LT   +      CG            S +C G   +P+    L+  L L+ + A  +R    +FGADQ     + G+     FFNW+Y++     ++SL V+ +++ ++S+ WG  I   ++ L+  +F   + ++    P GS ++S +++
Sbjct:   99 GRFLTISL-SLLLYLAASGLLLTTITNDGRRSFCGEMPELPLEPACPSSSCQGSWSSPYCATTLYLVLLLLALAASSVRSTLTSFGADQV---MDLGRDATRRFFNWFYWSINLGAILSLLVVAFIEQNISFLWGYSIIVGLVGLAFFIFLFATPVFITKPPTGSQVSSMLKL 267          
The following BLAST results are available for this feature:
BLAST of CB305071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
S15A3_HUMAN1.230e-1128.57Solute carrier family 15 member 3 OS=Homo sapiens ... [more]
S15A3_MOUSE7.972e-1124.86Solute carrier family 15 member 3 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_F09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_F09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305071 ID=CB305071; Name=CB305071; organism=Citrus sinensis; type=EST; length=593bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGAATATGGTTATGAAGGG
TGAGCCACGGTTCCTCTGGTAACTTCAAGTGCCTCTTCTTGATTGCGGCC
ACAAAGACCTGCACCGTACTAGCCAATGGACTGCCCTCTGGTTTTACTTT
CGCATAAAGTCTAGATCCCAGGAAGAACATTGCACAGGATAAGAACATCA
TAAATGCAGGGATTCCCAATCCCCAGGCCCAGCTCACATCCGATTGCACG
TAAACAATGACTGTCAAAGATATCATCATCGCGAAGGTGAAGGTGAAGTA
GTACCAATTGAAGAAGCTGGTGATTCCCTGCTTCCCAGATTCAGTATTGG
GATTAAATTGGTCAGCACCAAAGGCCAAGTTACATGGCCTAATGCCGCCA
GCTCCAATTACCATCAGTCCTAGCCCAGTGAACAGAAAAGCCAGTTGCCA
TGGTGTTGGCCCAGGGCACGCTCCAGAATCTTGATTTCCACAATCAGGTG
GGTGCAGTTTTGAGATTGCTGCTGTCAAAGAAAGTACAAGCATCCCCAGA
AAAGAGGCAACAGAAGCGAATCCCAGAGTCTTGTACCGGCCAA
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