CB305073

Overview
NameCB305073
Unique NameCB305073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305073_ssr178 microsatellite CB305073_ssr178:178..193. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:28..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.593e-26
Identity = 56/94 (59.57%), Postives = 69/94 (73.40%), Query Frame = -3
Query:  243 AITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVRW 524
            AI+CG VT+ L+PC+ YL TGG  P P CC GV+ L  AA TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS +T+C+ V++
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVKF 118          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.777e-26
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = -3
Query:  249 ITCGQVTASLAPCIPYLRTGGRFPPP-PCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 521
            +TCGQVT +LAPC+ YLR+    P P  CC+ VR LN AARTT D++ AC CLK+    + G+  N AAGLP++CGV IPYKISP+TDC+RV
Sbjct:   28 LTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.777e-26
Identity = 56/97 (57.73%), Postives = 68/97 (70.10%), Query Frame = -3
Query:  246 PVTNAITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 536
            P   A++CGQV + LAPC+PYL+  GR P   CC GV+ L GAA++  DR+ AC CLK A   I+GI    AAGLP  CGV IPYKISPSTDCS+V+
Sbjct:   20 PHAEALSCGQVQSGLAPCLPYLQ--GRGPLGSCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.777e-26
Identity = 56/97 (57.73%), Postives = 68/97 (70.10%), Query Frame = -3
Query:  246 PVTNAITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 536
            P   +++CG+VT+ LAPC+PYL   GR P   CC GV+ L GAA+T  DR+ AC CLK A  +I+GI    AAGLP  CGV IPYKISPSTDCS V+
Sbjct:   20 PHAESLSCGEVTSGLAPCLPYLE--GRGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.545e-26
Identity = 57/94 (60.64%), Postives = 69/94 (73.40%), Query Frame = -3
Query:  246 NAITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 527
            +AITCG+V  +LAPC+ YL+ GG  P   CC GVR+LN AA TTPDRQAACNCLK A G+I  +  N AA LP +C V IPYKIS ST+C+ +R
Sbjct:   23 SAITCGRVDTALAPCLGYLQ-GGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.545e-26
Identity = 54/96 (56.25%), Postives = 71/96 (73.96%), Query Frame = -3
Query:  246 VTNAITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 533
            V  AITCG V +SL+PC+ YL  GG   PPPCC+GV+ LNG A+TTPDRQ AC CL+ A    +G+ P++A+GLP +CGV IPY IS ST+C+ ++
Sbjct:   21 VDAAITCGTVASSLSPCLGYLSKGG-VVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSA---AKGVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.854e-26
Identity = 56/92 (60.87%), Postives = 67/92 (72.83%), Query Frame = -3
Query:  249 AITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 524
            AI+CGQV++++A C+ Y R  G  P   CCSGVRSLN AARTT DR+AACNCLK A   I G+    AA +PS+CGV +PY IS STDCSRV
Sbjct:   26 AISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.287e-25
Identity = 55/92 (59.78%), Postives = 66/92 (71.74%), Query Frame = -3
Query:  249 AITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 524
            AI+CGQV ++++PC+ Y R GG  P   CCSGVRSLN AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DCS V
Sbjct:   27 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.287e-25
Identity = 55/92 (59.78%), Postives = 66/92 (71.74%), Query Frame = -3
Query:  249 AITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 524
            AI+CGQV ++++PC+ Y R GG  P   CCSGVRSLN AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DCS V
Sbjct:   26 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.287e-25
Identity = 55/92 (59.78%), Postives = 66/92 (71.74%), Query Frame = -3
Query:  249 AITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 524
            AI+CGQV ++++PC+ Y R GG  P   CCSGVRSLN AA TT DR+ ACNCLK   G+I G+    AA +PS+CGV IPY ISPS DCS V
Sbjct:   27 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
The following BLAST results are available for this feature:
BLAST of CB305073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NLTP2_LENCU2.593e-2659.57Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP_DAUCA5.777e-2658.70Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP2_TOBAC5.777e-2657.73Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP2_SOLLC5.777e-2657.73Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP_CICAR7.545e-2660.64Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP4_ARATH7.545e-2656.25Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP1_SORBI9.854e-2660.87Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP2_ORYSI1.287e-2559.78Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2B_ORYSJ1.287e-2559.78Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLT2A_ORYSJ1.287e-2559.78Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_F12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_F12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305073 ID=CB305073; Name=CB305073; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTACCACAAAATAACTATAATTAA
TCACTCAAAACACAGATCGCGTTTACATATTTAATATGACATAAAAAGCA
AATATACAAACATGACATGAGAGTGAAACTCATACAAGTGGAGACTCGTT
CGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATTTATTCTTCT
CAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTCCACCTGA
CCCTAGAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTGACTCCA
CATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGGATTGT
TCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGGGGTGG
TTCTGGCGGCGCCGTTGAGAGACCTGACGCCGCTACAGCATGGCGGTGGA
GGAAAACGCCCTCCAGTTCTCAAGTAAGGGATGCATGGAGCCAAGGAGGC
TGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAGTCACCAGAA
TGCACAAAAGCAAAGCACAAACAAGCTTAAGAGCAGCCATGAGGATTCTT
CAGGGAGGCTTTTGCTTGGTTATAGCTAGNN
back to top