CB305073

Overview
NameCB305073
Unique NameCB305073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305073_ssr178 microsatellite CB305073_ssr178:178..193. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:28..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.170e-24
Identity = 51/94 (54.26%), Postives = 63/94 (67.02%), Query Frame = -3
Query:  246 NAITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 527
            +AITCGQV + L  C+ Y R GG  PP  CC+GVR+LN  A+TTPDRQ ACNCLK       G+   + AG+P +CGV IPY I   TDC++VR
Sbjct:   21 SAITCGQVDSDLTSCLGYARKGGVIPPG-CCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.140e-24
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = -3
Query:  249 ITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 521
            +TCGQV  +LA CI +L+ GG   PP CC+GV+++  ++RTT DR+A C+CLK A G +RGI PN A  LP +CGV IPYKIS ST+C+ +
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGG-VVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.062e-24
Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = -3
Query:  249 AITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 524
            AI+CGQV+++L+PCI Y R  G  PP  CCSGV+ L GAA++T D+QAAC CLK    +I+GI     +G+P +CGV +P+ IS STDC++V
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 9.223e-24
Identity = 53/91 (58.24%), Postives = 63/91 (69.23%), Query Frame = -3
Query:  249 ITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 521
            ITCG V++ LAPCI YL+ G       CC G+++LN AA TTPDR+ ACNCLK A   I+GI    AAGLP  CGV IPY ISPST+C+ V
Sbjct:   28 ITCGMVSSKLAPCIGYLKGGPL--GGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAV 116          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.573e-23
Identity = 52/93 (55.91%), Postives = 65/93 (69.89%), Query Frame = -3
Query:  249 AITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNC-LKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 524
            AI+CGQV++++ PC+ Y R  G  P   C SGVRSLN AARTT DR+AACNC LK A   + G+    A+ +P +CGVR+PY IS S DCSRV
Sbjct:    1 AISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.055e-23
Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = -3
Query:  249 NAITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 527
            +AI+CGQVT+ L PC  YL  GG  PP  CC+GVR LN AA+TTPDRQ AC CLK        I  N A  LP +CG+ I YKI+P+ DCS++
Sbjct:   24 DAISCGQVTSGLVPCFGYLAAGGPVPPA-CCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.505e-23
Identity = 53/95 (55.79%), Postives = 65/95 (68.42%), Query Frame = -3
Query:  246 AITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPN--VAAGLPSQCGVRIPYKISPSTDCSRVR 524
            A++CGQV  +L PCI Y+  GG   P  CC+GVRSL   A+TT DRQ+ CNCLK+A   I     N  +AAGLP +CGV IPYKISPSTDC  ++
Sbjct:   30 AVSCGQVVNNLTPCINYVANGGALNPS-CCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.978e-23
Identity = 55/102 (53.92%), Postives = 71/102 (69.61%), Query Frame = -3
Query:  246 PVTN--AITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK---RAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 536
            P+T+  A++CG V ++LA CI Y+  GG  PP  CCSGV++LN  A+TTPDRQ ACNC++   RA G+  G+    AAG+P  CGV IPYKIS ST+C  VR
Sbjct:   20 PITSNAALSCGSVNSNLAACIGYVLQGGVIPPA-CCSGVKNLNSIAKTTPDRQQACNCIQGAARALGS--GLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.332e-22
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = -3
Query:  249 PVTNAITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 536
            P+  AITCG V + LAPCI YL+ G   P   CC G++SLN AA +  DR+ AC CLK A  +I+GI    AA LP QCGV +PY ISP+T+C+ +
Sbjct:   22 PLAEAITCGLVASKLAPCIGYLQ-GAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.272e-22
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = -3
Query:  249 ITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 521
            ++CG V   LAPCI YLR+ G  P   CC+GV++L  +A TT DR+ AC CL  A  +I G+   +AAGLP +CGV IPYKISPST+C +V
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVA-CCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
The following BLAST results are available for this feature:
BLAST of CB305073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
SCA_LILLO3.170e-2454.26Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP1_PHAAU4.140e-2454.95Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP3_HORVU7.062e-2453.26Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP_SPIOL9.223e-2458.24Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP_ELECO1.573e-2355.91Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP_GERHY2.055e-2354.84Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP3_PRUDU3.505e-2355.79Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP1_ARATH5.978e-2353.92Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP_BETVU1.332e-2252.08Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP5_VITSX2.272e-2253.85Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_F12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_F12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305073 ID=CB305073; Name=CB305073; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTACCACAAAATAACTATAATTAA
TCACTCAAAACACAGATCGCGTTTACATATTTAATATGACATAAAAAGCA
AATATACAAACATGACATGAGAGTGAAACTCATACAAGTGGAGACTCGTT
CGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATTTATTCTTCT
CAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTCCACCTGA
CCCTAGAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTGACTCCA
CATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGGATTGT
TCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGGGGTGG
TTCTGGCGGCGCCGTTGAGAGACCTGACGCCGCTACAGCATGGCGGTGGA
GGAAAACGCCCTCCAGTTCTCAAGTAAGGGATGCATGGAGCCAAGGAGGC
TGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAGTCACCAGAA
TGCACAAAAGCAAAGCACAAACAAGCTTAAGAGCAGCCATGAGGATTCTT
CAGGGAGGCTTTTGCTTGGTTATAGCTAGNN
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