CB305073

Overview
NameCB305073
Unique NameCB305073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305073_ssr178 microsatellite CB305073_ssr178:178..193. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:28..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.633e-22
Identity = 52/99 (52.53%), Postives = 63/99 (63.64%), Query Frame = -3
Query:  246 PVTN--AITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 536
            P+T+  A++CG V+  +APCI YL       P  CCSGV SLN  ARTTPDRQ AC CL  A   +  I    AAGLP  CGV IPYKIS +T+C+ V+
Sbjct:   20 PITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP3_VITSX (Non-specific lipid-transfer protein P3 OS=Vitis sp. PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = -3
Query:  249 ITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 521
            ++CG V   +A CI YLR  G  P   CC+GV++L  +A TT DR+ AC CL  A  TI G+   +AAGLP++CGV IPYKISPST+C +V
Sbjct:    1 LSCGDVATQMASCINYLRGAGPLPAA-CCNGVKNLKNSATTTQDRRTACKCLISASKTISGVNFGLAAGLPAKCGVSIPYKISPSTNCDQV 90          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.280e-21
Identity = 52/94 (55.32%), Postives = 59/94 (62.77%), Query Frame = -3
Query:  246 AITCGQVTASLAPCIPYLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 524
            AI+  QV +SL PC+ Y+R     P PP  C G+RSL  AAR   DRQAAC C+K     I  I   VAAGLP QC V IPYKISPS DC RV+
Sbjct:   27 AISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINYGVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.284e-21
Identity = 47/92 (51.09%), Postives = 60/92 (65.22%), Query Frame = -3
Query:  249 AITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 524
            AITCGQV+++L PC  Y +  G  P   CCSGV+ L G AR+T D+QA C CLK   G     +   AAG+PS+CGV +PY IS S DCS++
Sbjct:   26 AITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKSVAGAYNAGR---AAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.284e-21
Identity = 52/99 (52.53%), Postives = 64/99 (64.65%), Query Frame = -3
Query:  246 PVTN--AITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 536
            P+T+  A++CG V+  +APCI YL   G  P   CC+GV +LN  ARTTPDRQ AC CL  A  +   +    AAGLP  CGV IPYKIS ST+C+ VR
Sbjct:   20 PITSNAALSCGTVSGYVAPCIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.308e-21
Identity = 51/93 (54.84%), Postives = 60/93 (64.52%), Query Frame = -3
Query:  246 AITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 524
            A++CG V+ +LA CI YL   G  P   CCSGV SLN  ARTTPDRQ AC CL  A   +  I    AAGLP  CGV IPYKIS +T+C+ V+
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPVPTA-CCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.545e-21
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = -3
Query:  246 AITCGQVTASLAPCIPYLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 524
            A+TC  VT +L PC+ YL+  G  PPP  CC+GVRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+ Y +SP+ +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.545e-21
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = -3
Query:  246 AITCGQVTASLAPCIPYLRTGGRFPPPP-CCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 524
            A+TC  VT +L PC+ YL+  G  PPP  CC+GVRSL  AA+T  DR+ ACNC+K A    + +   VAA L SQCGVR+ Y +SP+ +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.628e-20
Identity = 50/93 (53.76%), Postives = 60/93 (64.52%), Query Frame = -3
Query:  246 AITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 524
            A++CG V+ +LA CI YL   G  P   CC+GV +LN  ARTTPDRQ AC CL  A  +   +    AAGLP  CGV IPYKIS ST+C+ VR
Sbjct:   26 ALSCGTVSGNLAACIGYLTQNGPLPRG-CCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.126e-20
Identity = 50/103 (48.54%), Postives = 67/103 (65.05%), Query Frame = -3
Query:  246 PVT--NAITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNV----AAGLPSQCGVRIPYKISPSTDCSRVR 536
            P+T   A+TCG V +++APCI Y+  GG  P   CC+GV  LN  ARTTPDRQ AC CL+ A    R + PN+    AAG+P  CGV +P+ IS +T+C+ V+
Sbjct:   20 PITANRALTCGTVNSNVAPCIGYITQGGTLPGA-CCTGVSKLNSMARTTPDRQQACRCLETA---ARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
The following BLAST results are available for this feature:
BLAST of CB305073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NLTPD_BRAOT8.633e-2252.53Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP3_VITSX2.512e-2152.75Non-specific lipid-transfer protein P3 OS=Vitis sp... [more]
NLTP6_GOSHI3.280e-2155.32Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP8_HORVU4.284e-2151.09Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP2_BRANA4.284e-2152.53Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP3_BRANA7.308e-2154.84Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP_AMACA9.545e-2150.00Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP9.545e-2150.00Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTPB_BRAOT1.628e-2053.76Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTPA_BRAOT2.126e-2048.54Non-specific lipid-transfer protein A OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_F12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_F12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305073 ID=CB305073; Name=CB305073; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTACCACAAAATAACTATAATTAA
TCACTCAAAACACAGATCGCGTTTACATATTTAATATGACATAAAAAGCA
AATATACAAACATGACATGAGAGTGAAACTCATACAAGTGGAGACTCGTT
CGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATTTATTCTTCT
CAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTCCACCTGA
CCCTAGAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTGACTCCA
CATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGGATTGT
TCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGGGGTGG
TTCTGGCGGCGCCGTTGAGAGACCTGACGCCGCTACAGCATGGCGGTGGA
GGAAAACGCCCTCCAGTTCTCAAGTAAGGGATGCATGGAGCCAAGGAGGC
TGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAGTCACCAGAA
TGCACAAAAGCAAAGCACAAACAAGCTTAAGAGCAGCCATGAGGATTCTT
CAGGGAGGCTTTTGCTTGGTTATAGCTAGNN
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