CB305073

Overview
NameCB305073
Unique NameCB305073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305073_ssr178 microsatellite CB305073_ssr178:178..193. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:28..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.402e-17
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = -3
Query:  255 AITCGQVTASLAPCIPYLRTGG-RFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTI-RGIKPNVAAGLPSQCGVRIPY--KISPSTDCS 524
            A++CG+V ++L PC  YL  GG   P P CC+GVR LNG   TT DR+ AC C+K A   +  G+  + AAG+P +CG++IPY  +I  +T C+
Sbjct:   26 ALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = -3
Query:  249 ITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 521
            + CGQV +SLA CIP+L  G   P   CC+GV++L   A T+ DR+AAC C+K A      IK + A+ LP +CGV I   IS +T+C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 50/96 (52.08%), Postives = 58/96 (60.42%), Query Frame = -3
Query:  246 AITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK---RAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 524
            AI+CG VT SL  C  YL  GG F P  CCSGV+ LN  ARTT DRQ AC C++   RA G+   +    AA LP  C VRI Y IS  T+C+ VR
Sbjct:   26 AISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGS--RLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.863e-16
Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = -3
Query:  246 AITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIR--GIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 524
            AI+C  V A+L PC+ Y+  GG  P   CC+G+R L+  A +  D+Q  C C+K   G +    I    AA LP +CGV++PYKI PST+C+ ++
Sbjct:   23 AISCNAVQANLYPCVVYVVQGGAIPYS-CCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.433e-16
Identity = 42/96 (43.75%), Postives = 58/96 (60.42%), Query Frame = -3
Query:  246 AITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNV---AAGLPSQCGVRIPYKISPSTDCSRVR 524
            A++C  V A L PC+ Y+  GG  P   CC+G+ +L   A+T+ DRQ  C C+K A G +  + P     A  LPS+CGV +PYK SPSTDC  ++
Sbjct:   20 AVSCNTVIADLYPCLSYVTQGGPVPTL-CCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLT-LSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = -3
Query:  249 PVTNAITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVR-IPYKISPSTDCSRV 536
            PV  AI+C QV +++ PC  YL      P   CC  +R L+   + TPDRQA CNCLK       G+K   AA LP  C V  +   ISP+ DCS+V
Sbjct:   27 PVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLK-TQAKSYGVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.567e-13
Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = -3
Query:  249 ITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 521
            + CGQV  +L+ C+P+L      P   CC+GV  L   A T  D++ AC C+K A      I+ + A+ LP +CGV I   IS +T+C  +
Sbjct:    1 VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLT21_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.856e-11
Identity = 30/98 (30.61%), Postives = 52/98 (53.06%), Query Frame = -3
Query:  246 PVTNAITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPY-KISPSTDCSRVR 536
            P      CG+V   + PC+ +++   + P   CCSG + L+   +TT  ++ AC C+ RA   I GIK  + A +P +C ++     I+   DCS+++
Sbjct:   28 PAPGEEACGKVVQDIMPCLHFVKGEEKEPSKECCSGTKKLSEEVKTTEQKREACKCIVRATKGISGIKNELVAEVPKKCDIKTTLPPITADFDCSKIQ 125          
The following BLAST results are available for this feature:
BLAST of CB305073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NLTP7_ARATH6.402e-1745.74Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTPA_RICCO8.362e-1745.05Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP5_ARATH1.092e-1652.08Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTPA_ARATH1.863e-1642.11Non-specific lipid-transfer protein 10 OS=Arabidop... [more]
NLTP6_ARATH2.433e-1643.75Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTP_PINTA1.577e-1543.30Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTPB_RICCO9.567e-1337.36Non-specific lipid-transfer protein B OS=Ricinus c... [more]
NLT21_PARJU6.856e-1130.61Probable non-specific lipid-transfer protein 2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_F12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_F12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305073 ID=CB305073; Name=CB305073; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTACCACAAAATAACTATAATTAA
TCACTCAAAACACAGATCGCGTTTACATATTTAATATGACATAAAAAGCA
AATATACAAACATGACATGAGAGTGAAACTCATACAAGTGGAGACTCGTT
CGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATTTATTCTTCT
CAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTCCACCTGA
CCCTAGAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTGACTCCA
CATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGGATTGT
TCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGGGGTGG
TTCTGGCGGCGCCGTTGAGAGACCTGACGCCGCTACAGCATGGCGGTGGA
GGAAAACGCCCTCCAGTTCTCAAGTAAGGGATGCATGGAGCCAAGGAGGC
TGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAGTCACCAGAA
TGCACAAAAGCAAAGCACAAACAAGCTTAAGAGCAGCCATGAGGATTCTT
CAGGGAGGCTTTTGCTTGGTTATAGCTAGNN
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