CB305078

Overview
NameCB305078
Unique NameCB305078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1149..1740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK5_VITVI (S-adenosylmethionine synthetase 5 OS=Vitis vinifera GN=METK5 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.386e-46
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = -3
Query:  324 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 590
            CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKE+FDFRPGM+ INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK
Sbjct:  302 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 390          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK1_BRAJU (S-adenosylmethionine synthetase 1 OS=Brassica juncea GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.386e-46
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = -3
Query:  315 IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 587
            +VQVSYAIGVPEP SVFVD+YGTG IPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  303 LVQVSYAIGVPEPFSVFVDTYGTGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK3_ACTCH (S-adenosylmethionine synthetase 3 (Fragment) OS=Actinidia chinensis GN=SAM3 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.423e-46
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = -3
Query:  318 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 590
            CIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKESFDFRPGM+ I+LDLKRGGNGRFLKTAAYGHFGRDD DFTWEVVKPLKWEKPQ
Sbjct:  269 CIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKESFDFRPGMIAIHLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKWEKPQ 359          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_SOLBR (S-adenosylmethionine synthetase OS=Solanum brevidens GN=SAMS PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.776e-46
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = -3
Query:  318 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 590
            CIVQVSYAIGVPEPLSVFVD+YGTGKIPD+EILKIVKE+FDFRPGMM+INLDLKRGGNGRFLKTAAYGHFGRDD DFTWEVVKPLKWE PQ
Sbjct:  302 CIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILKIVKENFDFRPGMMSINLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKWENPQ 392          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK1_ORYSJ (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. japonica GN=SAM1 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.776e-46
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = -3
Query:  315 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 590
            CIVQVSYAIGVPEPLSVFVD+YGTG+IPDKEILKIVKE+FDFRPGM+ INLDLK+GGNGR+LKTAAYGHFGRDDPDFTWEVVKPLKWEKP A
Sbjct:  305 CIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA 396          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK1_ORYSI (S-adenosylmethionine synthetase 1 OS=Oryza sativa subsp. indica GN=SAM1 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 5.776e-46
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = -3
Query:  315 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 590
            CIVQVSYAIGVPEPLSVFVD+YGTG+IPDKEILKIVKE+FDFRPGM+ INLDLK+GGNGR+LKTAAYGHFGRDDPDFTWEVVKPLKWEKP A
Sbjct:  305 CIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKGGNGRYLKTAAYGHFGRDDPDFTWEVVKPLKWEKPSA 396          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_LITCN (S-adenosylmethionine synthetase OS=Litchi chinensis GN=SAMS PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.544e-46
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = -3
Query:  315 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 590
            CIVQVSYAIGVPEPLSVFVDSYGTGKIPD+EILKIVKE+FDFRPGM+++NLDLKRGGNGRFLKTAAYGHFGR+DPDFTWEVVKPLKW+K QA
Sbjct:  302 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDREILKIVKENFDFRPGMISVNLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWDKVQA 393          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK2_SOLLC (S-adenosylmethionine synthetase 2 OS=Solanum lycopersicum GN=SAM2 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 9.852e-46
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = -3
Query:  315 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 590
            CIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEIL IVKE+FDFRPGM++INLDL RGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KP+A
Sbjct:  302 CIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILNIVKENFDFRPGMISINLDLLRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPEA 393          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK1_ARATH (S-adenosylmethionine synthetase 1 OS=Arabidopsis thaliana GN=SAM1 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 9.852e-46
Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = -3
Query:  315 IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 587
            +VQVSYAIGVPEPLSVFVD+Y TG IPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  303 LVQVSYAIGVPEPLSVFVDTYETGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK2_ARATH (S-adenosylmethionine synthetase 2 OS=Arabidopsis thaliana GN=SAM2 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.287e-45
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = -3
Query:  315 IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 587
            +VQVSYAIGVPEPLSVFVD+YGTG IPDKEILKIVKE+FDFRPGMMTINLDLKRGGNGRF KTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  303 LVQVSYAIGVPEPLSVFVDTYGTGLIPDKEILKIVKETFDFRPGMMTINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393          
The following BLAST results are available for this feature:
BLAST of CB305078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK5_VITVI3.386e-4696.63S-adenosylmethionine synthetase 5 OS=Vitis vinifer... [more]
METK1_BRAJU3.386e-4694.51S-adenosylmethionine synthetase 1 OS=Brassica junc... [more]
METK3_ACTCH4.423e-4694.51S-adenosylmethionine synthetase 3 (Fragment) OS=Ac... [more]
METK_SOLBR5.776e-4693.41S-adenosylmethionine synthetase OS=Solanum brevide... [more]
METK1_ORYSJ5.776e-4691.30S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]
METK1_ORYSI5.776e-4691.30S-adenosylmethionine synthetase 1 OS=Oryza sativa ... [more]
METK_LITCN7.544e-4691.30S-adenosylmethionine synthetase OS=Litchi chinensi... [more]
METK2_SOLLC9.852e-4691.30S-adenosylmethionine synthetase 2 OS=Solanum lycop... [more]
METK1_ARATH9.852e-4694.51S-adenosylmethionine synthetase 1 OS=Arabidopsis t... [more]
METK2_ARATH1.287e-4593.41S-adenosylmethionine synthetase 2 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_G05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_G05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305078 ID=CB305078; Name=CB305078; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAGGAAGAATTTTACT
AATTCCAGGCACCAGTTGAGCAAAATTCTCAATCGATATCACTACACAAC
AGTGGGGACATGGTACATTAAACCAAAGCCAAAAGAGAAGGGGGGAAAGA
AGAAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTTCTGAACACAGG
AGATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTC
ATCCACTACCAATAGAAGCAAACTTGAACAGCAGGGATAGTTTTCACTTT
TCAACTCAAATTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAAC
TTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAG
TCTTCAAGAACCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTC
ATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCACAATTTTGAGGATCTC
CTTGTCAGGAATCTTGCCGGTTCCATATGAGTCCACAAAAACAGACAATG
GCTCAGGCACACCAATGGCATAGGAGACTTGGACAATGCACC
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