CB305078

Overview
NameCB305078
Unique NameCB305078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1149..1740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK3_PETHY (S-adenosylmethionine synthetase 3 OS=Petunia hybrida GN=SAM3 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.504e-43
Identity = 83/91 (91.21%), Postives = 86/91 (94.51%), Query Frame = -3
Query:  318 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 590
            CIVQVSYAIGVPEPLSVFVD+YGTG IPDKEILKIVKE+FDFRPGM+ INLDLKRGGNGRFLKTAAYGHFGRDD DFTWEVVKPLK EK Q
Sbjct:  302 CIVQVSYAIGVPEPLSVFVDTYGTGMIPDKEILKIVKENFDFRPGMIAINLDLKRGGNGRFLKTAAYGHFGRDDTDFTWEVVKPLKCEKAQ 392          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_PINBN (S-adenosylmethionine synthetase OS=Pinus banksiana GN=METK PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.577e-43
Identity = 80/92 (86.96%), Postives = 86/92 (93.48%), Query Frame = -3
Query:  315 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 590
            CIVQVSYAIGVPEPLS+FVD+YGTG IPDKEIL+I+KE FDFRPGM++INLDLKRGGNGR  KTAAYGHFGRDDPDFTWE VKPLKWEK QA
Sbjct:  302 CIVQVSYAIGVPEPLSLFVDTYGTGSIPDKEILEIIKEHFDFRPGMISINLDLKRGGNGRSQKTAAYGHFGRDDPDFTWETVKPLKWEKAQA 393          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK4_ARATH (S-adenosylmethionine synthetase 4 OS=Arabidopsis thaliana GN=METK4 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 7.807e-43
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = -3
Query:  315 IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 587
            IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEIL+IVKESFDFRPGM++INLDLKRGGNGRFLKTAAYGHFGRDD DFTWEVVKPLK  K QA
Sbjct:  303 IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILEIVKESFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKSNKVQA 393          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK2_SUASA (S-adenosylmethionine synthetase 2 OS=Suaeda salsa GN=METK2 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 7.807e-43
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = -3
Query:  315 IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 587
            IVQVSYAIGVPEPLSVFVD+YGTGKIPDK+ILKIVKE+FDFRPGM++INLDLKRGGN RF KTAAYGHFGRDDPDFTWE VKPLKWEK  A
Sbjct:  303 IVQVSYAIGVPEPLSVFVDTYGTGKIPDKDILKIVKENFDFRPGMISINLDLKRGGNARFQKTAAYGHFGRDDPDFTWETVKPLKWEKVPA 393          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK1_BETVU (S-adenosylmethionine synthetase 1 OS=Beta vulgaris GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.020e-42
Identity = 80/92 (86.96%), Postives = 89/92 (96.74%), Query Frame = -3
Query:  315 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 590
            CIVQ+SYAIGVPEPLSVFVD+YGTGKIPDK+ILKIVKE+FDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  306 CIVQISYAIGVPEPLSVFVDTYGTGKIPDKDILKIVKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 396          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK3_ATRNU (S-adenosylmethionine synthetase 3 OS=Atriplex nummularia GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.271e-42
Identity = 81/92 (88.04%), Postives = 87/92 (94.57%), Query Frame = -3
Query:  315 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 590
            CIVQ+SYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKESFDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  306 CIVQISYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKESFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK4_ATRNU (S-adenosylmethionine synthetase 4 OS=Atriplex nummularia GN=SAMS4 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.060e-42
Identity = 80/92 (86.96%), Postives = 87/92 (94.57%), Query Frame = -3
Query:  315 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 590
            CIVQ+SYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE+FDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  306 CIVQISYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK2_PINCO (S-adenosylmethionine synthetase 2 OS=Pinus contorta GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.060e-42
Identity = 79/92 (85.87%), Postives = 84/92 (91.30%), Query Frame = -3
Query:  315 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 590
            C+VQVSYAIGV   LS+FVDSYGTG IPDKEIL+I+KE FDFRPGM+TINLDLKRGGNGRF KTAAYGHFGRDDPDFTWE VKPLKWEK QA
Sbjct:  302 CLVQVSYAIGVRGALSIFVDSYGTGSIPDKEILEIIKEHFDFRPGMITINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWETVKPLKWEKAQA 393          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK2_ATRNU (S-adenosylmethionine synthetase 2 OS=Atriplex nummularia GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.060e-42
Identity = 80/92 (86.96%), Postives = 87/92 (94.57%), Query Frame = -3
Query:  315 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 590
            CIVQ+SYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE+FDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  306 CIVQISYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK1_ATRNU (S-adenosylmethionine synthetase 1 OS=Atriplex nummularia GN=SAMS1 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.060e-42
Identity = 80/92 (86.96%), Postives = 87/92 (94.57%), Query Frame = -3
Query:  315 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 590
            CIVQ+SYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE+FDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  306 CIVQISYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
The following BLAST results are available for this feature:
BLAST of CB305078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK3_PETHY3.504e-4391.21S-adenosylmethionine synthetase 3 OS=Petunia hybri... [more]
METK_PINBN4.577e-4386.96S-adenosylmethionine synthetase OS=Pinus banksiana... [more]
METK4_ARATH7.807e-4392.31S-adenosylmethionine synthetase 4 OS=Arabidopsis t... [more]
METK2_SUASA7.807e-4389.01S-adenosylmethionine synthetase 2 OS=Suaeda salsa ... [more]
METK1_BETVU1.020e-4286.96S-adenosylmethionine synthetase 1 OS=Beta vulgaris... [more]
METK3_ATRNU2.271e-4288.04S-adenosylmethionine synthetase 3 OS=Atriplex numm... [more]
METK4_ATRNU5.060e-4286.96S-adenosylmethionine synthetase 4 OS=Atriplex numm... [more]
METK2_PINCO5.060e-4285.87S-adenosylmethionine synthetase 2 OS=Pinus contort... [more]
METK2_ATRNU5.060e-4286.96S-adenosylmethionine synthetase 2 OS=Atriplex numm... [more]
METK1_ATRNU5.060e-4286.96S-adenosylmethionine synthetase 1 OS=Atriplex numm... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_G05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_G05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305078 ID=CB305078; Name=CB305078; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAGGAAGAATTTTACT
AATTCCAGGCACCAGTTGAGCAAAATTCTCAATCGATATCACTACACAAC
AGTGGGGACATGGTACATTAAACCAAAGCCAAAAGAGAAGGGGGGAAAGA
AGAAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTTCTGAACACAGG
AGATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTC
ATCCACTACCAATAGAAGCAAACTTGAACAGCAGGGATAGTTTTCACTTT
TCAACTCAAATTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAAC
TTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAG
TCTTCAAGAACCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTC
ATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCACAATTTTGAGGATCTC
CTTGTCAGGAATCTTGCCGGTTCCATATGAGTCCACAAAAACAGACAATG
GCTCAGGCACACCAATGGCATAGGAGACTTGGACAATGCACC
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