CB305078

Overview
NameCB305078
Unique NameCB305078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1149..1740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_ECO24 (S-adenosylmethionine synthetase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=metK PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.935e-13
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = -3
Query:  351 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 590
            C +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  295 CEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_CORK4 (S-adenosylmethionine synthetase OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=metK PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.935e-13
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = -3
Query:  351 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 590
            C VQV+YAIG   P+ ++V+++GT K P   I + V++ FD RP  +   LDLKR     + +TAAYGHFGR D D  WE
Sbjct:  310 CEVQVAYAIGRANPVGLYVETFGTEKEPISAIQEAVQKVFDLRPAAIIRELDLKR---PIYAQTAAYGHFGRTDLDLPWE 386          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_CITK8 (S-adenosylmethionine synthetase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=metK PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.935e-13
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = -3
Query:  351 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 590
            C +QVSYAIGV EP S+ V+++GT K+P +++  +V+E FD RP  +   LDL    +  + +TAAYGHFGR+   F WE
Sbjct:  295 CEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--HFPWE 369          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK1_CAEEL (Probable S-adenosylmethionine synthetase 1 OS=Caenorhabditis elegans GN=sams-1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.935e-13
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = -3
Query:  333 IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 587
            +VQ+SYAIG+ +P+SV V ++GT  + D+E+ +IV++SFD  PG +   LDLKR     + KTA  GHFG    +F WE  K LK
Sbjct:  302 LVQLSYAIGIAKPISVLVYAFGTSPLTDEELHQIVEDSFDLTPGKIIKELDLKR---PIYEKTAENGHFGHS--EFPWEQPKALK 381          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_STRU0 (S-adenosylmethionine synthetase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=metK PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = -3
Query:  351 VQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 584
            VQ++YAIGV +P+SV +D++GT  + + +I K V++ FD RP  +   LDLKR     + +TAAYGH GR D D  WE
Sbjct:  308 VQLAYAIGVAQPVSVRIDTFGTSTVSETDIEKAVRQLFDLRPAGIIKMLDLKR---PIYKQTAAYGHMGRTDIDLPWE 382          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_STRGC (S-adenosylmethionine synthetase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=metK PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13
Identity = 40/90 (44.44%), Postives = 58/90 (64.44%), Query Frame = -3
Query:  315 VQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 584
            VQ++YAIGV +P+SV +D++GTG + + ++ + V++ FD RP  +   LDLKR     + +TAAYGH GR D D  WE     K +K QA
Sbjct:  309 VQLAYAIGVAQPVSVRIDTFGTGIVAESKLQEAVRQIFDLRPAGIIQMLDLKR---PIYRQTAAYGHMGRTDIDLPWE-----KTDKVQA 390          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_STRA5 (S-adenosylmethionine synthetase OS=Streptococcus agalactiae serotype V GN=metK PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -3
Query:  345 VQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV 584
            VQ++YAIGV +P+SV VD++GTG I + ++   V++ FD RP  +   LDLKR     + +TAAYGH GR D D  WE V
Sbjct:  309 VQLAYAIGVAQPVSVRVDTFGTGVIAEADLEAAVRQIFDLRPAGIINMLDLKR---PIYRQTAAYGHMGRTDIDLPWERV 385          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_STRA3 (S-adenosylmethionine synthetase OS=Streptococcus agalactiae serotype III GN=metK PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -3
Query:  345 VQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV 584
            VQ++YAIGV +P+SV VD++GTG I + ++   V++ FD RP  +   LDLKR     + +TAAYGH GR D D  WE V
Sbjct:  309 VQLAYAIGVAQPVSVRVDTFGTGVIAEADLEAAVRQIFDLRPAGIINMLDLKR---PIYRQTAAYGHMGRTDIDLPWERV 385          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_STRA1 (S-adenosylmethionine synthetase OS=Streptococcus agalactiae serotype Ia GN=metK PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = -3
Query:  345 VQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVV 584
            VQ++YAIGV +P+SV VD++GTG I + ++   V++ FD RP  +   LDLKR     + +TAAYGH GR D D  WE V
Sbjct:  309 VQLAYAIGVAQPVSVRVDTFGTGVIAEADLEAAVRQIFDLRPAGIINMLDLKR---PIYRQTAAYGHMGRTDIDLPWERV 385          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_PROMS (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain AS9601) GN=metK PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.446e-13
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = -3
Query:  342 VQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLK----RGGNGRFLKTAAYGHFGRDDPDFTWEVVK 584
            VQ+SYAIGV +P+S+ V+++ TG I    + +++ + FD RP  +    DL+    + G   F KTA+YGHFGR D D  WE V+
Sbjct:  315 VQLSYAIGVAKPISILVETFDTGVISQANLTELINKYFDLRPAAIIKEFDLRNLPQKMGGTFFRKTASYGHFGRRDLDLPWEKVE 399          
The following BLAST results are available for this feature:
BLAST of CB305078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_ECO244.935e-1347.50S-adenosylmethionine synthetase OS=Escherichia col... [more]
METK_CORK44.935e-1347.50S-adenosylmethionine synthetase OS=Corynebacterium... [more]
METK_CITK84.935e-1347.50S-adenosylmethionine synthetase OS=Citrobacter kos... [more]
METK1_CAEEL4.935e-1347.06Probable S-adenosylmethionine synthetase 1 OS=Caen... [more]
METK_STRU06.446e-1347.44S-adenosylmethionine synthetase OS=Streptococcus u... [more]
METK_STRGC6.446e-1344.44S-adenosylmethionine synthetase OS=Streptococcus g... [more]
METK_STRA56.446e-1348.75S-adenosylmethionine synthetase OS=Streptococcus a... [more]
METK_STRA36.446e-1348.75S-adenosylmethionine synthetase OS=Streptococcus a... [more]
METK_STRA16.446e-1348.75S-adenosylmethionine synthetase OS=Streptococcus a... [more]
METK_PROMS6.446e-1342.35S-adenosylmethionine synthetase OS=Prochlorococcus... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_G05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_G05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305078 ID=CB305078; Name=CB305078; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAGGAAGAATTTTACT
AATTCCAGGCACCAGTTGAGCAAAATTCTCAATCGATATCACTACACAAC
AGTGGGGACATGGTACATTAAACCAAAGCCAAAAGAGAAGGGGGGAAAGA
AGAAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTTCTGAACACAGG
AGATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTC
ATCCACTACCAATAGAAGCAAACTTGAACAGCAGGGATAGTTTTCACTTT
TCAACTCAAATTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAAC
TTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAG
TCTTCAAGAACCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTC
ATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCACAATTTTGAGGATCTC
CTTGTCAGGAATCTTGCCGGTTCCATATGAGTCCACAAAAACAGACAATG
GCTCAGGCACACCAATGGCATAGGAGACTTGGACAATGCACC
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