CB305078

Overview
NameCB305078
Unique NameCB305078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1149..1740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK2_DIACA (S-adenosylmethionine synthetase 2 OS=Dianthus caryophyllus GN=SAM2 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.626e-40
Identity = 77/92 (83.70%), Postives = 85/92 (92.39%), Query Frame = -3
Query:  315 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 590
            CIVQ+SYAIGVPEPLSVFVD+YGTGKI D+EILKIVKE+FDFRPGM+ I LDLK+GGN R+LKTAAYGHFGR+DPDFTWE  K LKWEKPQA
Sbjct:  306 CIVQISYAIGVPEPLSVFVDTYGTGKIHDREILKIVKENFDFRPGMIAIALDLKKGGN-RYLKTAAYGHFGREDPDFTWEAAKTLKWEKPQA 396          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_MESCR (S-adenosylmethionine synthetase OS=Mesembryanthemum crystallinum GN=METK PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.185e-40
Identity = 78/91 (85.71%), Postives = 84/91 (92.31%), Query Frame = -3
Query:  318 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 590
            CIVQ+SYAIGV EPLSVFVD+YGTGKI DK+ILKIVKE+FDFRPGM+  NLDL RGGN R+LKTAAYGHFGRDD DFTWEVVKPLKWEKPQ
Sbjct:  302 CIVQISYAIGVAEPLSVFVDTYGTGKISDKDILKIVKETFDFRPGMIANNLDLLRGGN-RYLKTAAYGHFGRDDADFTWEVVKPLKWEKPQ 391          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_CAMSI (S-adenosylmethionine synthetase OS=Camellia sinensis GN=SAM PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.055e-39
Identity = 76/80 (95.00%), Postives = 78/80 (97.50%), Query Frame = -3
Query:  351 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 590
            CIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKESFDFRPGM+ INLDLKRGGN RFLKTAAYGHFGRDDPDFTWE
Sbjct:  302 CIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKESFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWE 381          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK3_ARATH (S-adenosylmethionine synthetase 3 OS=Arabidopsis thaliana GN=METK3 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.236e-39
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = -3
Query:  333 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 590
            CIVQVSYAIGVPEPLSVFVD+Y TG IPDK+IL ++KE+FDFRPGMM INLDLKRGGN RF KTAAYGHFGRDDPDFTWEVVKPLK
Sbjct:  302 CIVQVSYAIGVPEPLSVFVDTYKTGTIPDKDILVLIKEAFDFRPGMMAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWEVVKPLK 387          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK4_BRAJU (S-adenosylmethionine synthetase 4 OS=Brassica juncea GN=MSAMS4 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.839e-39
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = -3
Query:  333 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 590
            CIVQVSYAIGVPEPLSVFVD+Y TG IPDK+IL ++KE+FDFRPGMM INLDLKRGGN RF KTAAYGHFGRDDPDFTWEV+KPLK
Sbjct:  302 CIVQVSYAIGVPEPLSVFVDTYKTGTIPDKDILVLIKEAFDFRPGMMAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWEVIKPLK 387          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK1_PICSI (S-adenosylmethionine synthetase 1 OS=Picea sitchensis GN=METK1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.524e-38
Identity = 75/91 (82.42%), Postives = 83/91 (91.21%), Query Frame = -3
Query:  324 CIVQVSYAIGVPEPLSVFVDSYGTG--KIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 590
            C+VQVSYAIGVPEPLSVFVD+YGTG  KI D EILK++KE+FDFRPGM++INLDLKRGGN RF KTAAYGHFGR+DPDFTWE VK LKWEK
Sbjct:  302 CLVQVSYAIGVPEPLSVFVDTYGTGTGKIQDAEILKLIKENFDFRPGMISINLDLKRGGNMRFQKTAAYGHFGREDPDFTWETVKVLKWEK 392          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK1_VITVI (S-adenosylmethionine synthetase 1 OS=Vitis vinifera GN=METK1 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.561e-38
Identity = 73/89 (82.02%), Postives = 82/89 (92.13%), Query Frame = -3
Query:  324 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 590
            CIVQVSYAIGVPEPLSVFVD+Y TGKIPDK+IL ++K++FDFRPGM++INLDLKRGGN RF KTAAYGHFGRDDPDF+WE VK LK EK
Sbjct:  302 CIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILALIKKNFDFRPGMISINLDLKRGGNFRFQKTAAYGHFGRDDPDFSWETVKQLKPEK 390          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK3_VITVI (S-adenosylmethionine synthetase 3 OS=Vitis vinifera GN=METK3 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.684e-37
Identity = 72/86 (83.72%), Postives = 79/86 (91.86%), Query Frame = -3
Query:  333 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 590
            C+VQVSYAIGVPEPLSVFVD+Y TGKIPDK+IL ++KE+FDFRPGM+ INLDLKRGGN RF KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  302 CLVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILDLIKENFDFRPGMIAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWETVKLLK 387          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK4_POPTR (S-adenosylmethionine synthetase 4 OS=Populus trichocarpa GN=METK4 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.401e-37
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = -3
Query:  333 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 590
            CIVQVSYAIGVPEPLSVFVD+Y TGKIPD++IL+++KE+FDFRPGM+ INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  302 CIVQVSYAIGVPEPLSVFVDTYKTGKIPDRDILELIKENFDFRPGMIAINLDLMRGGNSRYQKTAAYGHFGRDDPDFTWETVKLLK 387          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK2_ACTCH (S-adenosylmethionine synthetase 2 OS=Actinidia chinensis GN=SAM2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.243e-36
Identity = 70/86 (81.40%), Postives = 77/86 (89.53%), Query Frame = -3
Query:  333 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 590
            CIVQVSYAIGVPEPLSVFVD+Y TGKIPDK+IL ++KE+FDFRPGM+ INLDLKRGGN R+ KTAAYGHFGRDD D TWE VK LK
Sbjct:  302 CIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAAYGHFGRDDADLTWETVKILK 387          
The following BLAST results are available for this feature:
BLAST of CB305078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK2_DIACA3.626e-4083.70S-adenosylmethionine synthetase 2 OS=Dianthus cary... [more]
METK_MESCR6.185e-4085.71S-adenosylmethionine synthetase OS=Mesembryanthemu... [more]
METK_CAMSI1.055e-3995.00S-adenosylmethionine synthetase OS=Camellia sinens... [more]
METK3_ARATH5.236e-3987.21S-adenosylmethionine synthetase 3 OS=Arabidopsis t... [more]
METK4_BRAJU6.839e-3986.05S-adenosylmethionine synthetase 4 OS=Brassica junc... [more]
METK1_PICSI1.524e-3882.42S-adenosylmethionine synthetase 1 OS=Picea sitchen... [more]
METK1_VITVI7.561e-3882.02S-adenosylmethionine synthetase 1 OS=Vitis vinifer... [more]
METK3_VITVI1.684e-3783.72S-adenosylmethionine synthetase 3 OS=Vitis vinifer... [more]
METK4_POPTR6.401e-3781.40S-adenosylmethionine synthetase 4 OS=Populus trich... [more]
METK2_ACTCH9.243e-3681.40S-adenosylmethionine synthetase 2 OS=Actinidia chi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_G05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_G05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305078 ID=CB305078; Name=CB305078; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAGGAAGAATTTTACT
AATTCCAGGCACCAGTTGAGCAAAATTCTCAATCGATATCACTACACAAC
AGTGGGGACATGGTACATTAAACCAAAGCCAAAAGAGAAGGGGGGAAAGA
AGAAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTTCTGAACACAGG
AGATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTC
ATCCACTACCAATAGAAGCAAACTTGAACAGCAGGGATAGTTTTCACTTT
TCAACTCAAATTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAAC
TTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAG
TCTTCAAGAACCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTC
ATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCACAATTTTGAGGATCTC
CTTGTCAGGAATCTTGCCGGTTCCATATGAGTCCACAAAAACAGACAATG
GCTCAGGCACACCAATGGCATAGGAGACTTGGACAATGCACC
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