CB305078

Overview
NameCB305078
Unique NameCB305078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1149..1740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_OSTTA (S-adenosylmethionine synthetase OS=Ostreococcus tauri GN=METK PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.520e-27
Identity = 59/85 (69.41%), Postives = 69/85 (81.18%), Query Frame = -3
Query:  336 IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPD-FTWEVVKPL 587
            + Q+SYAIGV +PLS+ VD+YG+GKIPD EIL+ VKE FDFR GM+  +LDLKRGGN R+  TAAYGHFGRDD D FTWE V PL
Sbjct:  302 LFQISYAIGVAQPLSIHVDTYGSGKIPDSEILEKVKEKFDFRAGMIGKSLDLKRGGNKRYQTTAAYGHFGRDDTDVFTWEKVVPL 386          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK2_PEA (S-adenosylmethionine synthetase 2 OS=Pisum sativum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.254e-26
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = -3
Query:  381 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHF 590
            C+VQVSYAIGVPEPLSVFVDSYGTGKIPD+EIL IVKE+FDFRPGM++I+LDL RGGNGRF + +    F
Sbjct:  304 CLVQVSYAIGVPEPLSVFVDSYGTGKIPDREILNIVKEAFDFRPGMISISLDLLRGGNGRFFEDSCIWTF 373          

HSP 2 Score: 23.0978 bits (48), Expect = 7.254e-26
Identity = 6/9 (66.67%), Postives = 7/9 (77.78%), Query Frame = -2
Query:  379 EDCCLWTLW 405
            ED C+WT W
Sbjct:  366 EDSCIWTFW 374          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_DICDI (S-adenosylmethionine synthetase OS=Dictyostelium discoideum GN=metK PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.261e-23
Identity = 54/86 (62.79%), Postives = 64/86 (74.42%), Query Frame = -3
Query:  333 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 590
            C+VQVSY+IGV +PLSVFVD+YGTGK  D EIL I+  +FD RPG +  +L L R     F KTA+ GHFGR+DPDFTWE VK LK
Sbjct:  301 CLVQVSYSIGVAKPLSVFVDTYGTGKKTDAEILAIIDNNFDLRPGCLMRDLQLTR---PIFQKTASGGHFGRNDPDFTWETVKELK 383          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_CELJU (S-adenosylmethionine synthetase OS=Cellvibrio japonicus (strain Ueda107) GN=metK PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.110e-20
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = -3
Query:  351 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 590
            C +QVSYAIGV EP S+ ++++GTGK+PD EI+K+V+E FD RP  +   L+LKR     + +TAAYGHFGR+ PDFTWE
Sbjct:  296 CEIQVSYAIGVAEPTSISINTFGTGKLPDAEIIKLVREHFDLRPRGLIEMLNLKR---PIYRQTAAYGHFGRELPDFTWE 372          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_THIDA (S-adenosylmethionine synthetase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=metK PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.702e-19
Identity = 44/81 (54.32%), Postives = 62/81 (76.54%), Query Frame = -3
Query:  348 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEV 590
            C+VQVSYAIGV +P S+ VD++GTGKIP+ +I+++++  FD RP  +   LDL R     + +TA+YGHFGRD+P+FTWEV
Sbjct:  298 CMVQVSYAIGVAKPTSLMVDTFGTGKIPEAKIVELIQAHFDLRPKGIVNMLDLLR---PIYTRTASYGHFGRDEPEFTWEV 375          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_FERNB (S-adenosylmethionine synthetase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=metK PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.529e-19
Identity = 45/88 (51.14%), Postives = 66/88 (75.00%), Query Frame = -3
Query:  333 IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE---VVKPLK 587
            ++QV+YAIGV  P+S+ ++++GT K+ ++++ K+V+E FDFRPG +   LDL R     + KTAAYGHFGR+DPDFTWE   +V+ LK
Sbjct:  307 MIQVAYAIGVARPVSIMINTFGTAKVDEEKLRKVVEEIFDFRPGAIIKKLDLLR---PIYRKTAAYGHFGRNDPDFTWERTDMVRELK 391          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_SYNWW (S-adenosylmethionine synthetase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=metK PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.609e-19
Identity = 43/80 (53.75%), Postives = 62/80 (77.50%), Query Frame = -3
Query:  351 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 590
            C +QV+YAIGV  PLS+ V+++GTGKI D +I++++K++FD RP  +  +LDL+R     + KTAAYGHFGR+D +FTWE
Sbjct:  306 CEIQVAYAIGVANPLSINVNTFGTGKISDDKIIELIKKNFDLRPAAIIRDLDLRR---PIYRKTAAYGHFGREDAEFTWE 382          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_GEOSM (S-adenosylmethionine synthetase OS=Geobacter sp. (strain M21) GN=metK PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.609e-19
Identity = 49/80 (61.25%), Postives = 57/80 (71.25%), Query Frame = -3
Query:  351 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 590
            C VQV+YAIGV EP+SV VD  GTGKIP K I +IV+E FD RP  +   LDL R     + KTAAYGHFGR+ P+FTWE
Sbjct:  299 CEVQVAYAIGVAEPVSVMVDCNGTGKIPSKRISEIVREVFDMRPRAIIEQLDLLR---PIYRKTAAYGHFGRELPEFTWE 375          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_NITMU (S-adenosylmethionine synthetase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=metK PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.019e-19
Identity = 44/80 (55.00%), Postives = 60/80 (75.00%), Query Frame = -3
Query:  351 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 590
            C VQ++YAIGV  P+S+ VD++GTGKIPD +I+K+++  FD RP  +   LDL R     + KTAAYGHFGRD+P+F+WE
Sbjct:  297 CEVQMAYAIGVARPVSLMVDTFGTGKIPDDKIVKLIERHFDLRPRGIIHGLDLLR---PIYEKTAAYGHFGRDEPEFSWE 373          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_DECAR (S-adenosylmethionine synthetase OS=Dechloromonas aromatica (strain RCB) GN=metK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.861e-19
Identity = 44/80 (55.00%), Postives = 59/80 (73.75%), Query Frame = -3
Query:  351 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 590
            C+VQVSYAIGV EP S+ V++YGTGK+ ++ +  +V++ FD RP  +   LDL R     + KTAAYGHFGRD+P+FTWE
Sbjct:  297 CLVQVSYAIGVAEPTSIMVETYGTGKVSNETLTALVRKHFDLRPKGIVNMLDLLR---PIYQKTAAYGHFGRDEPEFTWE 373          
The following BLAST results are available for this feature:
BLAST of CB305078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_OSTTA3.520e-2769.41S-adenosylmethionine synthetase OS=Ostreococcus ta... [more]
METK2_PEA7.254e-2677.14S-adenosylmethionine synthetase 2 OS=Pisum sativum... [more]
METK_DICDI5.261e-2362.79S-adenosylmethionine synthetase OS=Dictyostelium d... [more]
METK_CELJU7.110e-2057.50S-adenosylmethionine synthetase OS=Cellvibrio japo... [more]
METK_THIDA2.702e-1954.32S-adenosylmethionine synthetase OS=Thiobacillus de... [more]
METK_FERNB3.529e-1951.14S-adenosylmethionine synthetase OS=Fervidobacteriu... [more]
METK_SYNWW4.609e-1953.75S-adenosylmethionine synthetase OS=Syntrophomonas ... [more]
METK_GEOSM4.609e-1961.25S-adenosylmethionine synthetase OS=Geobacter sp. (... [more]
METK_NITMU6.019e-1955.00S-adenosylmethionine synthetase OS=Nitrosospira mu... [more]
METK_DECAR7.861e-1955.00S-adenosylmethionine synthetase OS=Dechloromonas a... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_G05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_G05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305078 ID=CB305078; Name=CB305078; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAGGAAGAATTTTACT
AATTCCAGGCACCAGTTGAGCAAAATTCTCAATCGATATCACTACACAAC
AGTGGGGACATGGTACATTAAACCAAAGCCAAAAGAGAAGGGGGGAAAGA
AGAAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTTCTGAACACAGG
AGATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTC
ATCCACTACCAATAGAAGCAAACTTGAACAGCAGGGATAGTTTTCACTTT
TCAACTCAAATTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAAC
TTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAG
TCTTCAAGAACCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTC
ATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCACAATTTTGAGGATCTC
CTTGTCAGGAATCTTGCCGGTTCCATATGAGTCCACAAAAACAGACAATG
GCTCAGGCACACCAATGGCATAGGAGACTTGGACAATGCACC
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