CB305084

Overview
NameCB305084
Unique NameCB305084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12382 contig Csv1_Contig12382:857..1534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305084 vs. ExPASy Swiss-Prot
Match: EF1G_DANRE (Elongation factor 1-gamma OS=Danio rerio GN=eef1g PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.000e-22
Identity = 50/143 (34.97%), Postives = 88/143 (61.54%), Query Frame = -3
Query:  248 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPFKVKGLWLFRGPEIPKFVMDEC-YDMELYDWKKADISDEEQKERVNQMIEDHEPFEGE 673
            S  ++D++KR YSN  +    VA+  FWD +D EG+S+W+ +Y++ +E T++F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG ++   + D+   D E Y W+K D+  EE K     M++++  +EGE
Sbjct:  291 SSFVMDEFKRKYSNEDT--MTVALPYFWDHFDREGFSIWYAEYRFPEELTMAFMSCNLITGMFQRLDKLRKNAFASVILFGANNDSCISGIWVFRGQDLAFPLSDDWQIDYESYTWRKLDVDSEECK----TMVKEYFAWEGE 427          
BLAST of CB305084 vs. ExPASy Swiss-Prot
Match: EF1G_RABIT (Elongation factor 1-gamma OS=Oryctolagus cuniculus GN=EEF1G PE=2 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 7.600e-22
Identity = 54/154 (35.06%), Postives = 86/154 (55.84%), Query Frame = -3
Query:  221 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPFKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 673
            S  +LD++KR YSN  +    VA+  FW+ +D +G+SLW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D S EE +  V +       F+  G+A    K FK
Sbjct:  286 STFVLDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGIWVFRGQELAFPLSPDWQVDYESYTWRKLDPSSEETQTLVREYFAWEGAFQHVGKAFNQGKVFK 437          
BLAST of CB305084 vs. ExPASy Swiss-Prot
Match: EF1G_MOUSE (Elongation factor 1-gamma OS=Mus musculus GN=Eef1g PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 1.693e-21
Identity = 53/154 (34.42%), Postives = 86/154 (55.84%), Query Frame = -3
Query:  221 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPFKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 673
            S  +LD++KR YSN  +    VA+  FW+ +D +G+SLW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D   EE +  V +       F+  G+A+   K FK
Sbjct:  286 STFVLDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGTFQHVGKAVNQGKIFK 437          
BLAST of CB305084 vs. ExPASy Swiss-Prot
Match: EF1G_MACFA (Elongation factor 1-gamma OS=Macaca fascicularis GN=EEF1G PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.888e-21
Identity = 53/154 (34.42%), Postives = 85/154 (55.19%), Query Frame = -3
Query:  221 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPFKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 673
            S  +LD++KR YSN  +    VA+  FW+ +D +G+SLW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D   EE +  V +       F+  G+A    K FK
Sbjct:  286 STFVLDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAFNQGKIFK 437          
BLAST of CB305084 vs. ExPASy Swiss-Prot
Match: EF1G_HUMAN (Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 2.888e-21
Identity = 53/154 (34.42%), Postives = 85/154 (55.19%), Query Frame = -3
Query:  221 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPFKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 673
            S  +LD++KR YSN  +    VA+  FW+ +D +G+SLW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D   EE +  V +       F+  G+A    K FK
Sbjct:  286 STFVLDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAFNQGKIFK 437          
BLAST of CB305084 vs. ExPASy Swiss-Prot
Match: EF1G_HORSE (Elongation factor 1-gamma OS=Equus caballus GN=EEF1G PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.888e-21
Identity = 53/154 (34.42%), Postives = 85/154 (55.19%), Query Frame = -3
Query:  221 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPFKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 673
            S  +LD++KR YSN  +    VA+  FW+ +D +G+SLW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D   EE +  V +       F+  G+A    K FK
Sbjct:  286 STFVLDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEEAQTLVREYFSWEGAFQHVGKAFNQGKIFK 437          
BLAST of CB305084 vs. ExPASy Swiss-Prot
Match: EF1GA_XENLA (Elongation factor 1-gamma-A OS=Xenopus laevis GN=eef1g-A PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.888e-21
Identity = 50/144 (34.72%), Postives = 87/144 (60.42%), Query Frame = -3
Query:  248 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPFKVKGLWLFRGPEIPKFVMDECY--DMELYDWKKADISDEEQKERVNQMIEDHEPFEGE 673
            S  I+D++KR YSN  +    VA+  FW+ +D EG+S+W+ +YK+ +E T +F++ N ++G  QR+D  RK  F  +++ G      + G+W+FRG ++  F + E +  D E Y+W+K D   EE K     +++++  +EGE
Sbjct:  285 SSFIMDEFKRKYSNEDT--LTVALPYFWEHFDKEGWSIWYAEYKFPEELTQAFMSCNLITGMFQRLDKLRKTGFASVILFGTNNNSSISGVWVFRGQDL-AFTLSEDWQIDYESYNWRKLDSGSEECK----TLVKEYFAWEGE 421          
BLAST of CB305084 vs. ExPASy Swiss-Prot
Match: EF1G_RAT (Elongation factor 1-gamma OS=Rattus norvegicus GN=Eef1g PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 3.772e-21
Identity = 52/154 (33.77%), Postives = 86/154 (55.84%), Query Frame = -3
Query:  221 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPFKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 673
            S  +LD++KR YSN  +    VA+  FW+ +D +G+SLW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG ++      D   D E Y W+K D   EE +  V +       F+  G+A+   K FK
Sbjct:  286 STFVLDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQDLAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAVNQGKIFK 437          
BLAST of CB305084 vs. ExPASy Swiss-Prot
Match: EF1G_ARTSA (Elongation factor 1-gamma OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 4.926e-21
Identity = 48/128 (37.50%), Postives = 74/128 (57.81%), Query Frame = -3
Query:  281 LDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPFKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQ 661
            +DD+KR YSN   N    +I  FW+ +D E YS+W+ +YKY DE    +++ N ++G  QR++  RK AF  + + G +    + G+W++RG ++  K   D   D E YDWKK D   +E K+ V Q
Sbjct:  285 MDDFKRFYSN---NEETKSIPYFWEKFDKENYSIWYSEYKYQDELAKVYMSCNLITGMFQRIEKMRKQAFASVCVFGEDNDSSISGIWVWRGQDLAFKLSPDWQIDYESYDWKKLDPDAQETKDLVTQ 409          
BLAST of CB305084 vs. ExPASy Swiss-Prot
Match: EF1G_PIG (Elongation factor 1-gamma (Fragment) OS=Sus scrofa GN=EEF1G PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.434e-21
Identity = 52/154 (33.77%), Postives = 85/154 (55.19%), Query Frame = -3
Query:  221 SKMILDDWKRLYSNTKSNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPFKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 673
            S  +LD++KR YSN  +    VA+  FW+ +D +G+SLW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D   EE +  V +       ++  G+A    K FK
Sbjct:  281 STFVLDEFKRKYSNEDT--LSVALPYFWEHFDKDGWSLWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAYQHVGKAFNQGKIFK 432          
The following BLAST results are available for this feature:
BLAST of CB305084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
EF1G_DANRE2.000e-2234.97Elongation factor 1-gamma OS=Danio rerio GN=eef1g ... [more]
EF1G_RABIT7.600e-2235.06Elongation factor 1-gamma OS=Oryctolagus cuniculus... [more]
EF1G_MOUSE1.693e-2134.42Elongation factor 1-gamma OS=Mus musculus GN=Eef1g... [more]
EF1G_MACFA2.888e-2134.42Elongation factor 1-gamma OS=Macaca fascicularis G... [more]
EF1G_HUMAN2.888e-2134.42Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G... [more]
EF1G_HORSE2.888e-2134.42Elongation factor 1-gamma OS=Equus caballus GN=EEF... [more]
EF1GA_XENLA2.888e-2134.72Elongation factor 1-gamma-A OS=Xenopus laevis GN=e... [more]
EF1G_RAT3.772e-2133.77Elongation factor 1-gamma OS=Rattus norvegicus GN=... [more]
EF1G_ARTSA4.926e-2137.50Elongation factor 1-gamma OS=Artemia salina PE=1 S... [more]
EF1G_PIG6.434e-2133.77Elongation factor 1-gamma (Fragment) OS=Sus scrofa... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_H02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_H02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305084 ID=CB305084; Name=CB305084; organism=Citrus sinensis; type=EST; length=678bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAGAACCATTGAAACTTGT
ATTAAAAAGATGTCCAAATCATCCTCAAAATTGCGACAAAATTATAAGTT
AATACTATAACACAAAATACTAGACTTCGATCTTTCTGAATTCGAAACAC
AAACAAACTCTACCAATAACCAAAGACAAACATGAACATCTTAAAACTAG
AAAAAAGATTAAGCTCATCACTTGAAGCACTTAGCATCCAAAAGAGCTTC
ACCCTCAAAAGGCTCGTGATCCTCGATCATCTGGTTCACACGTTCCTTTT
GCTCTTCGTCTGAGATGTCAGCCTTCTTCCAGTCATACAATTCCATGTCA
TAGCACTCATCCATGACGAATTTAGGAATTTCTGGGCCACGGAAGAGCCA
CAACCCCTTGACTTTGAATGGAGGCTCGTTGCCGATAATTAGCATCTTTC
CAAACGCATACTTGCGAGCCAGATCCATCCTCTGAAGAAACCCACTAACC
TTGTTCAAGGTCACGAATGACACAGTATTCTCGTCATTGTATTTGTAATC
ACAGAACCAAAGTGAGTAACCCTCAGGATCATACATGTCCCAGAATCCTT
TAATTGCAACTTCACGGAAGTTGGACTTCGTGTTTGAGTAAAGCCTCTTC
CAGTCATCCAGAATCATCTTACTTGGGG
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