CB305086

Overview
NameCB305086
Unique NameCB305086
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305086_ssr168 microsatellite CB305086_ssr168:168..179. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13714 contig Csv1_Contig13714:626..1241. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.537e-36
Identity = 77/116 (66.38%), Postives = 89/116 (76.72%), Query Frame = -3
Query:  267 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 614
            +ET+ FAN  IDWKETPQAHVFKADLPGL+         EG++LQISGER+KE+EEKN+KWHRVE SSGKFLRRFRLP+NA V++VKA MENGVLTVT           K+I ISG
Sbjct:   44 KETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.537e-36
Identity = 76/115 (66.09%), Postives = 88/115 (76.52%), Query Frame = -3
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            + + FA ARIDWKETP+ HVFKAD+PGL+         +G ILQISGERS+EQEEK+DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+ISG
Sbjct:   45 DAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.007e-36
Identity = 74/116 (63.79%), Postives = 89/116 (76.72%), Query Frame = -3
Query:  267 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 614
            R+ + F NAR+DWKETP+AHVFKADLPGL+         +  +LQISGERSKE EEKNDKWHRVER+SGKF+RRFRLP+NAK+E+VKA+MENGVLTV            K+I+ISG
Sbjct:   44 RDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159          
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.622e-36
Identity = 76/115 (66.09%), Postives = 89/115 (77.39%), Query Frame = -3
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            E+S FAN RIDWKETP+ HVFK DLPGL+         E R+LQISGER+ E+E+KNDKWHR+ERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:   40 ESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.622e-36
Identity = 74/115 (64.35%), Postives = 88/115 (76.52%), Query Frame = -3
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            + + F NA++DW+ETP+AHVFKADLPGLR         +G ILQISGERS E EEKNDKWHRVERSSGKF RRFRLP+NAK+E++KASMENGVL+VT           K+I+ISG
Sbjct:   43 DVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.472e-36
Identity = 75/115 (65.22%), Postives = 87/115 (75.65%), Query Frame = -3
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            E S F N R+DWKETP+AHVF+AD+PGL+         + R+LQISGER+ E+E+KND WHRVERSSG F+RRFRLP+NAKVEQVKASMENGVLTVT           KAIEISG
Sbjct:   39 ENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.472e-36
Identity = 75/116 (64.66%), Postives = 89/116 (76.72%), Query Frame = -3
Query:  267 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 614
            RE   F + R+DWKETP+AHVFKADLPGL+         + R+LQISGERS E+E+KND+WHRVERSSGKFLRRFRLP+NAK+++VKASMENGVLTVT           K+IEISG
Sbjct:   43 RENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 4.472e-36
Identity = 75/115 (65.22%), Postives = 87/115 (75.65%), Query Frame = -3
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            + + FA ARIDWKETP+AHVFKAD+PGL+         +G +LQISGER KEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+I+G
Sbjct:   40 DAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.628e-36
Identity = 74/115 (64.35%), Postives = 88/115 (76.52%), Query Frame = -3
Query:  267 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 611
            E S F + R+DWKETP+AHVFKAD+PGL+         +GR+LQISGER+ E+E+KND WHRVERSSGK +RRFRLP+NAKV+QVKASMENGVLTVT           KAI+ISG
Sbjct:   39 ENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.699e-35
Identity = 72/116 (62.07%), Postives = 89/116 (76.72%), Query Frame = -3
Query:  267 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 614
            RE S F + R+DWKETP+AHVFKADLPG++         + R+LQISGERS E+E+KND+WHR+ERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT           K I+ISG
Sbjct:   43 RENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
The following BLAST results are available for this feature:
BLAST of CB305086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP12_DAUCA1.537e-3666.3818.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS177_ORYSJ1.537e-3666.0917.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS181_ARATH2.007e-3663.7918.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_SOLLC2.622e-3666.0917.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS17C_ARATH2.622e-3664.3517.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP13_SOYBN4.472e-3665.2217.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA4.472e-3664.6618.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HS174_ORYSJ4.472e-3665.2217.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_SOYBN7.628e-3664.3517.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA1.699e-3562.0718.2 kDa class I heat shock protein OS=Medicago sa... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_H05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_H05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305086 ID=CB305086; Name=CB305086; organism=Citrus sinensis; type=EST; length=616bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAATATATTTTATTGCA
TCACACTTTTTTATCATTTAAAAGACTAGTTACAACGCTTGAGACTGGCT
CCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAACAGGG
GGAAGGGAAGAAAACAAACACACACACACATACAAACACACAAGGGCTTT
GCTTTCGTACCAAATTTATTAGCAAACCAAAGACACTATCTTGAAAACAT
TTACAGTTATCACTTAGCCAGAGATCTCAATAGCCTTAACTTCAGGTTTC
TTCTCCTCCTGTTTAGGAACGGTGACTGTGAGCACACCATTCTCCATGCT
GGCCTTAACCTGTTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCA
GGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCT
TCCTGCTCCTTGCTCCTCTCTCCGCTTATCTGCAGAATCCTGCCCTCTTC
AACCTCAACTTTTACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCTTTGA
ATACGTGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAAT
TGGGATGTTTCCCTAG
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