CB305086

Overview
NameCB305086
Unique NameCB305086
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305086_ssr168 microsatellite CB305086_ssr168:168..179. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13714 contig Csv1_Contig13714:626..1241. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.352e-15
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = -3
Query:  321 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 614
            R+    A    D KE P A+ F  D+PGL          + R+L +SGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   47 RDARAMAATPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 144          
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.352e-15
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = -3
Query:  321 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 614
            R+    A    D KE P ++VF  D+PGL+         E  +L ISGER +E+E++  K+ R+ER  GKF+R+F LP+NA  + + A  ++GVLTVT
Sbjct:   38 RDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVT 135          
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 38/98 (38.78%), Postives = 60/98 (61.22%), Query Frame = -3
Query:  321 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 614
            R+    A    D KE P ++VF  D+PG++         +  +L ISGER +E+E++  K+ ++ER  GK +R+F LP+NA +E + A  ++GVLTVT
Sbjct:   35 RDAKAMAATPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVT 132          
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.811e-14
Identity = 37/98 (37.76%), Postives = 61/98 (62.24%), Query Frame = -3
Query:  321 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 614
            R+    A    D KE P ++VF  D+PGL+            +L ISG+R++E+E++  K+ R+ER  GKF+++F LP++A  +++ A  ++GVLTVT
Sbjct:   43 RDARAMAATPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVT 140          
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.284e-14
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  321 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSK----EQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 614
            R+    A    D K+ P A+ F  D+PGL+         E R+L ISGER +    E++E++ K+ R+ER  GKF+R+F LPDNA V+++ A  ++GVLTVT
Sbjct:   45 RDARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVT 146          
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.828e-13
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = -3
Query:  321 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 614
            R+    A    D KE P ++VF AD+PG++         +  +L +SGER++ ++++ D  K+ R+ER  GKF+R+F LP+NA VE + A  ++GVL VT
Sbjct:   48 RDAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVT 147          
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  321 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 581
            D KE P ++VF  D+PGL+            +L ISGER +E EEK   K+ R+ER  GK +R+F LP+NA  E++ A  ++GVLTVT
Sbjct:   48 DVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVT 135          
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.073e-13
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = -3
Query:  321 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 614
            R+    A    D KE   A+ F  D+PGL          + R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   38 RDARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 134          
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.073e-13
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = -3
Query:  321 DWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 581
            D KE P A+ F  D+PGL          + R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA ++++ A   +GVLTVT
Sbjct:   56 DVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVT 141          
BLAST of CB305086 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 36/98 (36.73%), Postives = 59/98 (60.20%), Query Frame = -3
Query:  321 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 614
            R+    A    D KE P ++VF+ D+PGL+         +  +L I GER +++E++  K+ R+ER  GK +R+F LP+NA  + + A  ++GVL+VT
Sbjct:   42 RDAKAMAATPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVT 139          
The following BLAST results are available for this feature:
BLAST of CB305086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP22_MAIZE4.352e-1543.8817.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_SOLPE4.352e-1541.8417.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP21_PEA3.684e-1438.7817.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_HELAN4.811e-1437.7617.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP18_ORYSJ6.284e-1442.1618.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP22_IPONI1.828e-1339.0018.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_IPONI3.119e-1345.4517.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP23_MAIZE4.073e-1343.8817.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP21_MAIZE4.073e-1345.9817.5 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_SOYBN5.320e-1336.7317.9 kDa class II heat shock protein OS=Glycine ma... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_H05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_H05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305086 ID=CB305086; Name=CB305086; organism=Citrus sinensis; type=EST; length=616bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAATATATTTTATTGCA
TCACACTTTTTTATCATTTAAAAGACTAGTTACAACGCTTGAGACTGGCT
CCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAACAGGG
GGAAGGGAAGAAAACAAACACACACACACATACAAACACACAAGGGCTTT
GCTTTCGTACCAAATTTATTAGCAAACCAAAGACACTATCTTGAAAACAT
TTACAGTTATCACTTAGCCAGAGATCTCAATAGCCTTAACTTCAGGTTTC
TTCTCCTCCTGTTTAGGAACGGTGACTGTGAGCACACCATTCTCCATGCT
GGCCTTAACCTGTTCCACCTTAGCATTGTCGGGCAACCTGAACCTCCTCA
GGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCTTCTCT
TCCTGCTCCTTGCTCCTCTCTCCGCTTATCTGCAGAATCCTGCCCTCTTC
AACCTCAACTTTTACTTCTTCTTTCCTCAGCCCTGGAAGATCAGCTTTGA
ATACGTGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGGCGAAT
TGGGATGTTTCCCTAG
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