CB305090

Overview
NameCB305090
Unique NameCB305090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2673 contig Csv1_Contig2673:872..1385. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CML11_ARATH (Calmodulin-like protein 11 OS=Arabidopsis thaliana GN=CML11 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.209e-25
Identity = 51/62 (82.26%), Postives = 61/62 (98.39%), Query Frame = -2
Query:  328 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 513
            LKEAF+VFDKDQNG+ISA+ELRHVM NLGEKLTDEEVD+MI+EAD+DGDGQ+NY+EFV++MM
Sbjct:  109 LKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVDQMIKEADLDGDGQVNYDEFVRMMM 170          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALMF_NAEGR (Calmodulin, flagellar OS=Naegleria gruberi GN=CAM1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.203e-24
Identity = 54/64 (84.38%), Postives = 58/64 (90.62%), Query Frame = -2
Query:  322 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 513
            +KEAF+VFDKD NGFISA ELRHVM NLGEKLTDEEVDEMIREAD+DGD QINY EFVK+MM K
Sbjct:   92 IKEAFKVFDKDGNGFISAQELRHVMCNLGEKLTDEEVDEMIREADIDGDNQINYTEFVKMMMQK 155          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALM_PLAFA (Calmodulin OS=Plasmodium falciparum PE=3 SV=4)

HSP 1 Score: 112.079 bits (279), Expect = 1.571e-24
Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = -2
Query:  322 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 513
            L EAFRVFD+D +G+ISA ELRHVMTNLGEKLT+EEVDEMIREAD+DGDGQINYEEFVK+M+AK
Sbjct:   86 LIEAFRVFDRDGDGYISADELRHVMTNLGEKLTNEEVDEMIREADIDGDGQINYEEFVKMMIAK 149          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALM_PLAF7 (Calmodulin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0323 PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.571e-24
Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = -2
Query:  322 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 513
            L EAFRVFD+D +G+ISA ELRHVMTNLGEKLT+EEVDEMIREAD+DGDGQINYEEFVK+M+AK
Sbjct:   86 LIEAFRVFDRDGDGYISADELRHVMTNLGEKLTNEEVDEMIREADIDGDGQINYEEFVKMMIAK 149          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALM_ORYLA (Calmodulin-A (Fragment) OS=Oryzias latipes GN=calm1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.571e-24
Identity = 52/58 (89.66%), Postives = 57/58 (98.28%), Query Frame = -2
Query:  340 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 513
            ++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV
Sbjct:   79 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 136          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALN_CHICK (Neo-calmodulin (Fragment) OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.679e-24
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = -2
Query:  343 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 513
            ++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEF
Sbjct:   75 IREAFRVFDKDSNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 131          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALM_PNECA (Calmodulin OS=Pneumocystis carinii PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.679e-24
Identity = 53/64 (82.81%), Postives = 60/64 (93.75%), Query Frame = -2
Query:  322 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 513
            ++EAF+VFDKD NG ISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDG I+Y EFVK+M++K
Sbjct:   88 IREAFKVFDKDGNGIISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGVIDYSEFVKMMLSK 151          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALL3_HUMAN (Calmodulin-like protein 3 OS=Homo sapiens GN=CALML3 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.679e-24
Identity = 51/64 (79.69%), Postives = 60/64 (93.75%), Query Frame = -2
Query:  322 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 513
            ++EAFRVFDKD NGF+SAAELRHVMT LGEKL+DEEVDEMIR AD DGDGQ+NYEEFV+V+++K
Sbjct:   86 IREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIRAADTDGDGQVNYEEFVRVLVSK 149          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALM_PARTE (Calmodulin OS=Paramecium tetraurelia GN=CAM PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 4.570e-24
Identity = 52/64 (81.25%), Postives = 60/64 (93.75%), Query Frame = -2
Query:  322 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 513
            L EAF+VFD+D NG ISAAELRHVMTNLGEKLTD+EVDEMIREAD+DGDG INYEEFV++M++K
Sbjct:   86 LIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMMVSK 149          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALM_DICDI (Calmodulin OS=Dictyostelium discoideum GN=calA PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 4.570e-24
Identity = 50/64 (78.12%), Postives = 62/64 (96.88%), Query Frame = -2
Query:  322 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 513
            ++EAF+VFDKD NG+ISAAELRHVMT+LGEKLT+EEVDEMIREAD+DGDGQ+NY+EFVK+M+ +
Sbjct:   88 IREAFKVFDKDGNGYISAAELRHVMTSLGEKLTNEEVDEMIREADLDGDGQVNYDEFVKMMIVR 151          
The following BLAST results are available for this feature:
BLAST of CB305090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
CML11_ARATH9.209e-2582.26Calmodulin-like protein 11 OS=Arabidopsis thaliana... [more]
CALMF_NAEGR1.203e-2484.38Calmodulin, flagellar OS=Naegleria gruberi GN=CAM1... [more]
CALM_PLAFA1.571e-2484.38Calmodulin OS=Plasmodium falciparum PE=3 SV=4[more]
CALM_PLAF71.571e-2484.38Calmodulin OS=Plasmodium falciparum (isolate 3D7) ... [more]
CALM_ORYLA1.571e-2489.66Calmodulin-A (Fragment) OS=Oryzias latipes GN=calm... [more]
CALN_CHICK2.679e-2489.47Neo-calmodulin (Fragment) OS=Gallus gallus PE=2 SV... [more]
CALM_PNECA2.679e-2482.81Calmodulin OS=Pneumocystis carinii PE=3 SV=1[more]
CALL3_HUMAN2.679e-2479.69Calmodulin-like protein 3 OS=Homo sapiens GN=CALML... [more]
CALM_PARTE4.570e-2481.25Calmodulin OS=Paramecium tetraurelia GN=CAM PE=1 S... [more]
CALM_DICDI4.570e-2478.13Calmodulin OS=Dictyostelium discoideum GN=calA PE=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_H10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_H10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305090 ID=CB305090; Name=CB305090; organism=Citrus sinensis; type=EST; length=514bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAACATCGCAAGGGTAGAAA
TTAATGAAACACATTAAACAGACAACAACATTCATAGAACAGCAGAACAA
CTAAAATAATAAAAACCGAAAAGTTTTGCGAGTCACAAGACATATTGACG
AGGGAGACAACATTCTTCCTACACCATCAGGCCCATCACCATTAAAAGAC
CATTGCTTCCTTTAGCCTGACCCTCATGACTATCAAATTAAAAATTGTAA
AAGAGAAAACTAGGAATCCCTTTATAATTTAGTCAACCCATTTTATAAGT
ATTGGGGGGTTGGGGTCATTACTTGGCCATCATAACCTTGACAAATTCCT
CATAATTTATCTGGCCATCACCATCAACATCAGCTTCCCTTATCATCTCA
TCAACTTCTTCATCAGTAAGTTTCTCTCCTAGGTTTGTCATCACATGGCG
CAGCTCAGCAGCTGAGATGAAACCATTCTGATCCTTGTCGAAAACCCGGA
AGGCCTCTTTCAGC
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