CB305090

Overview
NameCB305090
Unique NameCB305090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2673 contig Csv1_Contig2673:872..1385. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALMA_ARBPU (Calmodulin-alpha (Fragment) OS=Arbacia punctulata PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 4.570e-24
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = -2
Query:  343 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 513
            ++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEF
Sbjct:   86 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALMS_CHICK (Calmodulin, striated muscle OS=Gallus gallus GN=CCM1 PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.018e-23
Identity = 51/64 (79.69%), Postives = 59/64 (92.19%), Query Frame = -2
Query:  322 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 513
            ++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMI+EAD + DGQ+NYEEFV++M  K
Sbjct:   86 IREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIKEADCNNDGQVNYEEFVRMMTEK 149          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CML8_ARATH (Calmodulin-like protein 8 OS=Arabidopsis thaliana GN=CML8 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.737e-23
Identity = 49/62 (79.03%), Postives = 60/62 (96.77%), Query Frame = -2
Query:  328 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 513
            LKEAF+VFDKDQNG+ISA+EL HVM NLGEKLTDEEV++MI+EAD+DGDGQ+NY+EFVK+M+
Sbjct:   87 LKEAFKVFDKDQNGYISASELSHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYDEFVKMMI 148          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALL3_RAT (Calmodulin-like protein 3 OS=Rattus norvegicus GN=Calml3 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.869e-23
Identity = 49/64 (76.56%), Postives = 59/64 (92.19%), Query Frame = -2
Query:  322 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 513
            ++EAFRVFDKD NGF+SAAELRHVMT LGEKL+DEEVDEMI+ AD DGDGQ+NYEEFV ++++K
Sbjct:   86 IREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIQAADTDGDGQVNYEEFVHMLVSK 149          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALL3_MOUSE (Calmodulin-like protein 3 OS=Mus musculus GN=Calml3 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.869e-23
Identity = 49/64 (76.56%), Postives = 59/64 (92.19%), Query Frame = -2
Query:  322 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 513
            ++EAFRVFDKD NGF+SAAELRHVMT LGEKL+DEEVDEMI+ AD DGDGQ+NYEEFV ++++K
Sbjct:   86 IREAFRVFDKDGNGFVSAAELRHVMTKLGEKLSDEEVDEMIQAADTDGDGQVNYEEFVHMLVSK 149          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALM_NEUCR (Calmodulin OS=Neurospora crassa GN=cmd-1 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 5.053e-23
Identity = 49/64 (76.56%), Postives = 60/64 (93.75%), Query Frame = -2
Query:  322 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 513
            ++EAF+VFD+D NGFISAAELRHVMT++GEKLTD+EVDEMIREAD DGDG+I+Y EFV++MM K
Sbjct:   86 IREAFKVFDRDNNGFISAAELRHVMTSIGEKLTDDEVDEMIREADQDGDGRIDYNEFVQLMMQK 149          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALM_MAGGR (Calmodulin OS=Magnaporthe grisea GN=CMD1 PE=3 SV=4)

HSP 1 Score: 107.071 bits (266), Expect = 5.053e-23
Identity = 49/64 (76.56%), Postives = 60/64 (93.75%), Query Frame = -2
Query:  322 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 513
            ++EAF+VFD+D NGFISAAELRHVMT++GEKLTD+EVDEMIREAD DGDG+I+Y EFV++MM K
Sbjct:   86 IREAFKVFDRDNNGFISAAELRHVMTSIGEKLTDDEVDEMIREADQDGDGRIDYNEFVQLMMQK 149          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALM_EMENI (Calmodulin OS=Emericella nidulans GN=camA PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 5.053e-23
Identity = 49/64 (76.56%), Postives = 60/64 (93.75%), Query Frame = -2
Query:  322 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 513
            ++EAF+VFD+D NGFISAAELRHVMT++GEKLTD+EVDEMIREAD DGDG+I+Y EFV++MM K
Sbjct:   86 IREAFKVFDRDNNGFISAAELRHVMTSIGEKLTDDEVDEMIREADQDGDGRIDYNEFVQLMMQK 149          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALM_COLTR (Calmodulin OS=Colletotrichum trifolii PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 5.053e-23
Identity = 49/64 (76.56%), Postives = 60/64 (93.75%), Query Frame = -2
Query:  322 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 513
            ++EAF+VFD+D NGFISAAELRHVMT++GEKLTD+EVDEMIREAD DGDG+I+Y EFV++MM K
Sbjct:   86 IREAFKVFDRDNNGFISAAELRHVMTSIGEKLTDDEVDEMIREADQDGDGRIDYNEFVQLMMQK 149          
BLAST of CB305090 vs. ExPASy Swiss-Prot
Match: CALM_COLGL (Calmodulin OS=Colletotrichum gloeosporioides PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 5.053e-23
Identity = 49/64 (76.56%), Postives = 60/64 (93.75%), Query Frame = -2
Query:  322 LKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 513
            ++EAF+VFD+D NGFISAAELRHVMT++GEKLTD+EVDEMIREAD DGDG+I+Y EFV++MM K
Sbjct:   86 IREAFKVFDRDNNGFISAAELRHVMTSIGEKLTDDEVDEMIREADQDGDGRIDYNEFVQLMMQK 149          
The following BLAST results are available for this feature:
BLAST of CB305090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
CALMA_ARBPU4.570e-2489.47Calmodulin-alpha (Fragment) OS=Arbacia punctulata ... [more]
CALMS_CHICK1.018e-2379.69Calmodulin, striated muscle OS=Gallus gallus GN=CC... [more]
CML8_ARATH1.737e-2379.03Calmodulin-like protein 8 OS=Arabidopsis thaliana ... [more]
CALL3_RAT3.869e-2376.56Calmodulin-like protein 3 OS=Rattus norvegicus GN=... [more]
CALL3_MOUSE3.869e-2376.56Calmodulin-like protein 3 OS=Mus musculus GN=Calml... [more]
CALM_NEUCR5.053e-2376.56Calmodulin OS=Neurospora crassa GN=cmd-1 PE=1 SV=2[more]
CALM_MAGGR5.053e-2376.56Calmodulin OS=Magnaporthe grisea GN=CMD1 PE=3 SV=4[more]
CALM_EMENI5.053e-2376.56Calmodulin OS=Emericella nidulans GN=camA PE=3 SV=... [more]
CALM_COLTR5.053e-2376.56Calmodulin OS=Colletotrichum trifolii PE=3 SV=2[more]
CALM_COLGL5.053e-2376.56Calmodulin OS=Colletotrichum gloeosporioides PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_H10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_H10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305090 ID=CB305090; Name=CB305090; organism=Citrus sinensis; type=EST; length=514bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAACATCGCAAGGGTAGAAA
TTAATGAAACACATTAAACAGACAACAACATTCATAGAACAGCAGAACAA
CTAAAATAATAAAAACCGAAAAGTTTTGCGAGTCACAAGACATATTGACG
AGGGAGACAACATTCTTCCTACACCATCAGGCCCATCACCATTAAAAGAC
CATTGCTTCCTTTAGCCTGACCCTCATGACTATCAAATTAAAAATTGTAA
AAGAGAAAACTAGGAATCCCTTTATAATTTAGTCAACCCATTTTATAAGT
ATTGGGGGGTTGGGGTCATTACTTGGCCATCATAACCTTGACAAATTCCT
CATAATTTATCTGGCCATCACCATCAACATCAGCTTCCCTTATCATCTCA
TCAACTTCTTCATCAGTAAGTTTCTCTCCTAGGTTTGTCATCACATGGCG
CAGCTCAGCAGCTGAGATGAAACCATTCTGATCCTTGTCGAAAACCCGGA
AGGCCTCTTTCAGC
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