CB305104

Overview
NameCB305104
Unique NameCB305104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2157 contig Csv1_Contig2157:62..589. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305104 vs. ExPASy Swiss-Prot
Match: CYT2_ORYSJ (Cysteine proteinase inhibitor 2 OS=Oryza sativa subsp. japonica GN=Os05g0494200 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = -3
Query:  179 KGALVGGWKPIEAPKEKHV--MEIGQFAVTEYNNQSKSALKFESVEKGETQVVSGTNYRLILVVKD-GPSTKKFEAVVWEKPWEHFKSLPSFKPM 454
            +G  VGG     A +E  +  +E+ +FAV E+N+++ + L+ E V K   QVV G  + L + VK+ G + K +EA VWE+ WE+FK L  FKP+
Sbjct:   52 RGVKVGGIHDAPAGRENDLTTVELARFAVAEHNSKANAMLELERVVKVRQQVVGGFMHYLTVEVKEPGGANKLYEAKVWERAWENFKQLQDFKPL 146          
BLAST of CB305104 vs. ExPASy Swiss-Prot
Match: CYT7_ORYSJ (Putative cysteine proteinase inhibitor 7 OS=Oryza sativa subsp. japonica GN=Os03g0210100 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.616e-11
Identity = 44/119 (36.97%), Postives = 68/119 (57.14%), Query Frame = -3
Query:  179 MNQRFCCLIVLFLSVVPLLAAGDRKGALVGGWKPIEAPKEKHVMEIGQFAVTEYNNQ-SKSALKFESVEKGETQVVSGTNYRLIL-VVKDGPSTKKFEAVVWEK-PWEHFKSLPSFKPM 526
            M  R   L++  ++VV ++A      A VG W+P++   + HV E+G++AV E +   +   L FE V  GE QVV+G NYRL L     G    ++EAVV+E+ P  + + L SF+P+
Sbjct:    1 MTMRTSSLLLAAVAVVAIVAGAT--AATVGSWEPVDI-NDPHVQELGRWAVAEEDRGVAAGGLTFERVTDGEKQVVAGVNYRLTLEASSSGAKDGRYEAVVYEQDPRSNARKLVSFEPI 116          
BLAST of CB305104 vs. ExPASy Swiss-Prot
Match: CYT1_ARATH (Cysteine proteinase inhibitor 1 OS=Arabidopsis thaliana GN=CYS1 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.169e-11
Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = -3
Query:  188 AGDRKGALVGGWKPIEA-PKEKHVMEIGQFAVTEYNNQSKSALKFESVEKGETQVVSGTNYRLILVVKDGPSTKKFEAVVWEKPWEHFKSLPSF 466
            A  + G +VGG + I+A   +  V  + +FAV E+N      L+++ +   +TQVV+GT + L + V DG + K +EA V EK WE+ K L SF
Sbjct:    2 ADQQAGTIVGGVRDIDANANDLQVESLARFAVDEHNKNENLTLEYKRLLGAKTQVVAGTMHHLTVEVADGETNKVYEAKVLEKAWENLKQLESF 95          
The following BLAST results are available for this feature:
BLAST of CB305104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CYT2_ORYSJ1.243e-1140.00Cysteine proteinase inhibitor 2 OS=Oryza sativa su... [more]
CYT7_ORYSJ3.616e-1136.97Putative cysteine proteinase inhibitor 7 OS=Oryza ... [more]
CYT1_ARATH6.169e-1138.30Cysteine proteinase inhibitor 1 OS=Arabidopsis tha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_C01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_C01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305104 ID=CB305104; Name=CB305104; organism=Citrus sinensis; type=EST; length=528bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAGAAAATGGAAAATC
GAAATCTGAAAGACTCACCTTTGACATTCATAAACAATATAATAATATCA
TCACTCACATAACGAAAACCTTAATAATTATCAATCTGAGATTACATGCA
TTGGTATTTGTTAAACACCCTATTTAACCATAGGCTTAAACGAGGGGAGA
CTCTTGAAATGCTCCCATGGCTTCTCCCAAACGACAGCTTCAAATTTCTT
GGTCGAAGGGCCGTCCTTGACGACCAAGATCAGCCGGTAATTGGTGCCGG
AAACCACCTGAGTCTCGCCCTTCTCCACGCTCTCGAACTTCAACGCGCTC
TTTGACTGGTTGTTGTACTCCGTCACCGCGAACTGCCCGATCTCCATCAC
GTGCTTCTCCTTGGGGGCCTCTATCGGCTTCCATCCCCCAACCAACGCTC
CTTTACGGTCGCCGGCGGCCAGGAGAGGGACCACGGAGAGAAAGAGAACA
ATAAGACAGCAAAAACGTTGATTCATTT
back to top