CB305105

Overview
NameCB305105
Unique NameCB305105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2148 contig Csv1_Contig2148:391..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 6.554e-41
Identity = 82/121 (67.77%), Postives = 91/121 (75.21%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 638
            AHGII+VYDVTDQ SFNNVKQWL EIDRYASENVNKLLVGNKCDLT KKVV Y TAK FAD +GIPF+ETSAK++ NVEQ+FM M A+IK RM        A    V+I+  PV Q    C
Sbjct:   84 AHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.907e-40
Identity = 82/122 (67.21%), Postives = 96/122 (78.69%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVN-QKASCC 638
            AHGII+VYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNK DLT KKVV + TAK +AD++GIPF+ETSAK++ NVEQAFM M A+IKNRM    A ++++P        PV+  K  CC
Sbjct:   84 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAASDSKPSVKINSSTPVSANKGGCC 205          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.367e-38
Identity = 79/123 (64.23%), Postives = 97/123 (78.86%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMN-NARPPTVQIKGQPVNQ-KASCC 638
            AHGIIIVYD T+ ESFNNVKQWL+EIDRYA+E+V KLL+GNK D+ + KVVS ET +A ADE+GIPF+ETSAKDS+NVEQAF+ +  +IK +M SQ   N  + P TVQ+KGQP+ Q    CC
Sbjct:   81 AHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQMKGQPIQQNNGGCC 203          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.193e-38
Identity = 81/121 (66.94%), Postives = 90/121 (74.38%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 638
            AHGII+VYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT KKVV   TAK FAD +GIPF+ETSAK++ NVEQAFM M A+IK RM    A    R P ++I   PV Q    C
Sbjct:   81 AHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKQAGGGC 200          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.193e-38
Identity = 81/121 (66.94%), Postives = 90/121 (74.38%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 638
            AHGII+VYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT KKVV   TAK FAD +GIPF+ETSAK++ NVEQAFM M A+IK RM    A    R P ++I   PV Q    C
Sbjct:   81 AHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKQAGGGC 200          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.511e-37
Identity = 76/128 (59.38%), Postives = 100/128 (78.12%), Query Frame = -1
Query:  270 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI-KNRMASQPAMNNARPPTVQIKGQPVNQK----ASCCST 638
            AHGIIIVYD+TD ESFNNVKQWL+EIDRYA+++V KLLVGNKCDL + + V    A+A+A E+GIPF+ETSAK+S+NVE+AF+AM+A I K++  SQ A+       VQ+KG+P+ Q+    + CCST
Sbjct:   81 AHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVVQMKGRPIQQEQQKSSRCCST 208          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.973e-37
Identity = 79/121 (65.29%), Postives = 90/121 (74.38%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 638
            AHGII+VYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT KKVV   TAK FAD +G+PF+ETSAK++ NVEQAFM M A+IK RM    A    R P ++I   PV   +  C
Sbjct:   81 AHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKSASGGC 200          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.577e-37
Identity = 80/121 (66.12%), Postives = 89/121 (73.55%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 638
            AHGII+VYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT KKVV   TAK FAD +GIPF+ETSAK++ NVEQAFM M A+IK RM    A    R P ++I   PV      C
Sbjct:   81 AHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.577e-37
Identity = 79/121 (65.29%), Postives = 90/121 (74.38%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 638
            AHGII+VYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT KKVV   TAK FAD +G+PF+ETSAK++ NVEQAFM M A+IK RM    A    R P ++I   PV   +  C
Sbjct:   81 AHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPASGGC 200          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.577e-37
Identity = 80/121 (66.12%), Postives = 89/121 (73.55%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 638
            AHGII+VYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT KKVV   TAK FAD +GIPF+ETSAK++ NVEQAFM M A+IK RM    A    R P ++I   PV      C
Sbjct:   81 AHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPVKPAGGGC 200          
The following BLAST results are available for this feature:
BLAST of CB305105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
RAB1A_PIG6.554e-4167.77Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1A_LYMST1.907e-4067.21Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RABD1_ARATH1.367e-3864.23Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB1B_PIG5.193e-3866.94Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
RAB1B_BOVIN5.193e-3866.94Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
YPTM1_MAIZE1.511e-3759.38GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB1B_RAT1.973e-3765.29Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB1B_PONAB2.577e-3766.12Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_MOUSE2.577e-3765.29Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1B_HUMAN2.577e-3766.12Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305105 ID=CB305105; Name=CB305105; organism=Citrus sinensis; type=EST; length=638bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGAAAANNNACAATTTA
ATAACATTTGCCACTATCAAGCAACACATCATTTGTACATGCCATATAAT
AGTAATATAGACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTA
GTAAAGCAATCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGG
TTCCTACAACGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGA
AGGATAAGACAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACC
GGTTGTCCTTTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGG
TTGACTTGCCATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTT
GTTCCACGTTCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCA
ATTTCATCAGCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATC
AGTGAGATCACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTG
CATAGCGATCAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCT
TGGTCTGTAACATCATAAACAATGATAATGCCATGTGC
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