CB305105

Overview
NameCB305105
Unique NameCB305105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2148 contig Csv1_Contig2148:391..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.755e-29
Identity = 60/121 (49.59%), Postives = 86/121 (71.07%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 638
            A GI++VYDVTD++SF +++ W+  I+++AS++VNK+L+GNKCD+T+KKVV     K+ ADE GI F+ETSAK+S+NVE+AF+ +  DIK RM   P       P   I   P N+K +CC
Sbjct:   88 AMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDTP-----NDPDHTICITPNNKKNTCC 203          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.560e-26
Identity = 59/128 (46.09%), Postives = 86/128 (67.19%), Query Frame = -1
Query:  270 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD-KKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPP-TVQIKGQPVNQ---KASCCST 638
            A GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK D+ + K+ V     +A ADE GI F ETSAK ++NVE+ F ++  DIK R+A       A+P  T++   Q  NQ   K++CC +
Sbjct:   88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEAQPSITIKPADQSGNQAAAKSACCGS 215          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.560e-26
Identity = 51/90 (56.67%), Postives = 73/90 (81.11%), Query Frame = -1
Query:  369 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 638
            AHG+IIVYD+T  +SFN++K+WL ++DR+AS +V KL+VGNKCDL  K+ V ++ AK FADE+ IP METSAK+S  +++AF+ + +DIK
Sbjct:  106 AHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIK 195          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.733e-25
Identity = 62/131 (47.33%), Postives = 82/131 (62.60%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT-DKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVN---------QKASCC 638
            A GII+VYD+TD+ SFNNV+ W+  I+++AS+NVNK+LVGNK DL  DK+VVS    +A ADE G  F ETSAKD+++VE+AF+A+  D+  RM  + A             QPV          Q  SCC
Sbjct:   86 AQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARMEGEHANQQLLQQQQLSAAQPVRLTSGSPSPAQGKSCC 216          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.263e-25
Identity = 60/132 (45.45%), Postives = 87/132 (65.91%), Query Frame = -1
Query:  270 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD-KKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIK--------GQPVNQKASCCST 638
            A GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK D+ + K+ V     +A ADE GI F ETSAK ++NVE+ F ++  DIK R++     + A P T++I         GQ   QK++CC T
Sbjct:   88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTD--SRAEPATIKISQTDQAAGAGQ-ATQKSACCGT 216          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RABG2_DICDI (Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.860e-25
Identity = 55/103 (53.40%), Postives = 78/103 (75.73%), Query Frame = -1
Query:  336 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI-KNRM-ASQPAMNN 638
            AHG+++ YDVTDQ ++NNV+ W+ EI RYA   V+++LVGNKCDL D+K+V+   A+ +AD +GIPFME SA   +NVE+AFMAM  +I +N M  S+P++ N
Sbjct:   79 AHGVLVCYDVTDQLTYNNVRLWMQEIQRYAVLGVSRVLVGNKCDLEDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEIYRNHMGGSKPSVVN 181          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.281e-24
Identity = 52/121 (42.98%), Postives = 78/121 (64.46%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 638
            A GI++VYDVTD++SFNN++ W   +  YA+E V  +LVGNKCDL +K+VVS E  +A AD+ GIPF+E S+K ++NVE+ F ++   I++ +A     N +    + I     N  + CC
Sbjct:   84 AMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAKTKG-NESGSGGINIAEGEENSASKCC 203          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RABG1_DICDI (Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.281e-24
Identity = 55/122 (45.08%), Postives = 80/122 (65.57%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQ-IKGQPVNQKASCC 638
            AHG+++ YDVTDQ ++NNV  W+ EI RY    V+++LVGNKCDL D+K+V+   A+ +AD +GIPF+ETSA   +NVE+AFMAM  +I         +  ++P  V+ + G P   K + C
Sbjct:   80 AHGVLVCYDVTDQLTYNNVGLWMQEIQRYGVLGVSRVLVGNKCDLEDRKLVNASIAQEYADILGIPFIETSATTGVNVEEAFMAMADEIYRN-----HIGGSKPSVVKPVCGSPPRTKKNIC 196          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.767e-23
Identity = 45/92 (48.91%), Postives = 73/92 (79.35%), Query Frame = -1
Query:  363 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNR 638
            A GI+++YDVTD++SF+NV+ W + ++++ASENV K+L+GNKCD  D++ VS+E  +A ADE+G+ F+E SAK ++NV++AF  +  +IK +
Sbjct:   82 AMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQ 173          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.613e-23
Identity = 55/136 (40.44%), Postives = 84/136 (61.76%), Query Frame = -1
Query:  231 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCST*SFVLSFIACICL 638
            A GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+ DK+ VS E  +  A + GI FMETSAK ++NVE AF  +  DIK +M  +   N+ +     +K  P  QK S         SF  C+ L
Sbjct:   81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKRS---------SFFRCVLL 207          
The following BLAST results are available for this feature:
BLAST of CB305105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
RAB8B_DICDI5.755e-2949.59Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RB1BV_BETVU4.560e-2646.09Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB1C_DICDI4.560e-2656.67Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
YPTV2_VOLCA1.733e-2547.33GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
ARA3_ARATH2.263e-2545.45Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RABG2_DICDI3.860e-2553.40Ras-related protein RabG2 OS=Dictyostelium discoid... [more]
RYL1_YARLI7.281e-2442.98Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RABG1_DICDI7.281e-2445.08Ras-related protein RabG1 OS=Dictyostelium discoid... [more]
YPT2_SCHPO2.767e-2348.91GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RAB8A_MACFA3.613e-2340.44Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305105 ID=CB305105; Name=CB305105; organism=Citrus sinensis; type=EST; length=638bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGAAAANNNACAATTTA
ATAACATTTGCCACTATCAAGCAACACATCATTTGTACATGCCATATAAT
AGTAATATAGACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTA
GTAAAGCAATCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGG
TTCCTACAACGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGA
AGGATAAGACAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACC
GGTTGTCCTTTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGG
TTGACTTGCCATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTT
GTTCCACGTTCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCA
ATTTCATCAGCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATC
AGTGAGATCACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTG
CATAGCGATCAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCT
TGGTCTGTAACATCATAAACAATGATAATGCCATGTGC
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