CB305105

Overview
NameCB305105
Unique NameCB305105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2148 contig Csv1_Contig2148:391..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB44_MOUSE (Ras-related protein Rab-44 OS=Mus musculus GN=Rab44 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.412e-11
Identity = 35/121 (28.93%), Postives = 62/121 (51.24%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 638
            A G++++YDVT QESF +V+ WL+ +     E V  +L+GNK D  +++ V  E  +  A E+G+ F E SA    N+ +  M +   +K +       +  +    ++      ++A CC
Sbjct:  610 AEGVVLMYDVTSQESFTHVRYWLDCLQDAGVEGVAMVLLGNKMDCEEERQVPTEAGRRLAQELGVSFGECSAALGHNILEPMMNLARSLKMQ------EDRLKASLAEVTHPQSTKRAGCC 724          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RASEF_MOUSE (RAS and EF-hand domain-containing protein homolog OS=Mus musculus GN=Rasef PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = -1
Query:  363 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD------KKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNR 638
            A G++++YDVT ++SF NV++W++ ++      +  +LVGNK DL D      +K +S    +  A   G  F ETSAKD  NV +A + +  ++K R
Sbjct:  501 ADGVLLLYDVTCEKSFLNVREWVDMVEDGTHRTIPIMLVGNKADLRDVDNAENQKCISAYLGEKLAMTYGALFCETSAKDGSNVVEAVLHLAREVKKR 598          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RALA_SAGOE (Ras-related protein Ral-A OS=Saguinus oedipus GN=RALA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = -1
Query:  330 GIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR 632
            G + V+ +T+ ESF     +  +I R    ENV  LLVGNK DL DK+ VS E AK  AD+  + ++ETSAK   NV++ F  +  +I+ R        N +
Sbjct:   88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGK 189          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RALA_RAT (Ras-related protein Ral-A OS=Rattus norvegicus GN=Rala PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = -1
Query:  330 GIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR 632
            G + V+ +T+ ESF     +  +I R    ENV  LLVGNK DL DK+ VS E AK  AD+  + ++ETSAK   NV++ F  +  +I+ R        N +
Sbjct:   88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGK 189          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RALA_MOUSE (Ras-related protein Ral-A OS=Mus musculus GN=Rala PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = -1
Query:  330 GIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR 632
            G + V+ +T+ ESF     +  +I R    ENV  LLVGNK DL DK+ VS E AK  AD+  + ++ETSAK   NV++ F  +  +I+ R        N +
Sbjct:   88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGK 189          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB7_MESCR (Ras-related protein Rab7A OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = -1
Query:  276 IIVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLT--DKKVVSYETAKAFADEIG-IPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 626
            ++ YDV   +SF ++ +W  E    AS    +N   +L+GNK D+     +VVS + AKA+    G IP+ ETSAKD  NVE+AF  +    KN + ++P      P T+ + G    Q +S C
Sbjct:   85 VLTYDVNVMKSFESLNRWREEFLIQASPADPDNFPFVLLGNKIDVDGGSGRVVSEKKAKAWCMSKGNIPYFETSAKDGTNVEEAFQCIA---KNAIQNEPEEETYLPDTIDMAGSTRPQSSSAC 205          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: VPS21_YEAST (Vacuolar protein sorting-associated protein 21 OS=Saccharomyces cerevisiae GN=VPS21 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 42/131 (32.06%), Postives = 65/131 (49.62%), Query Frame = -1
Query:  279 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD---KKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAM-------TADIKNRMASQPAMNNARPP-TVQIKGQPVNQKASC 638
            A   ++VYDVT  +SF   + W+ E+   AS+++   LVGNK D+     ++ V+ E  +  A+E G+ F ETSAK   NV   F+ +       TA+ +N  +++   NN R        G   N   SC
Sbjct:   80 AQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLKTAEEQNSASNERESNNQRVDLNAANDGTSANSACSC 210          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RALBB_XENLA (Ras-related protein ralB-B OS=Xenopus laevis GN=ralb-B PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 37/121 (30.58%), Postives = 65/121 (53.72%), Query Frame = -1
Query:  276 GIIIVYDVTDQESFNNVKQWLNEIDRYASEN--VNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 632
            G ++V+ +T+ ESF    ++  +I R  +E   +  L+VGNK DL D++ V  + A+  A+E G+ ++ETSAK   NV++ F  +  +++ +  S+    N +      KG     K  CC
Sbjct:   88 GFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEDRRQVPMDEARGKAEEWGVQYVETSAKTRANVDKVFFDLMREVRTKKMSENKDKNGKKSGKSKKG----FKQRCC 204          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB17_HUMAN (Ras-related protein Rab-17 OS=Homo sapiens GN=RAB17 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 40/123 (32.52%), Postives = 65/123 (52.85%), Query Frame = -1
Query:  273 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCS 638
            A+  ++VYD+T ++SF   +QWL +++       V  +LVGNK DL+ ++ V+++  K FAD   + FMETSAK +  V + F  +  ++  R   +             KG P  Q A CC+
Sbjct:   91 ANAALLVYDITRKDSFLKAQQWLKDLEEELHPGEVLVMLVGNKTDLSQEREVTFQEGKEFADSQKLLFMETSAKLNHQVSEVFNTVAQELLQRSDEEGQALRGDAAVALNKG-PARQ-AKCCA 211          
The following BLAST results are available for this feature:
BLAST of CB305105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
RAB44_MOUSE5.412e-1128.93Ras-related protein Rab-44 OS=Mus musculus GN=Rab4... [more]
RASEF_MOUSE7.068e-1135.71RAS and EF-hand domain-containing protein homolog ... [more]
RALA_SAGOE7.068e-1138.24Ras-related protein Ral-A OS=Saguinus oedipus GN=R... [more]
RALA_RAT7.068e-1138.24Ras-related protein Ral-A OS=Rattus norvegicus GN=... [more]
RALA_MOUSE7.068e-1138.24Ras-related protein Ral-A OS=Mus musculus GN=Rala ... [more]
RAB7_MESCR7.068e-1135.48Ras-related protein Rab7A OS=Mesembryanthemum crys... [more]
VPS21_YEAST9.231e-1132.06Vacuolar protein sorting-associated protein 21 OS=... [more]
RALBB_XENLA9.231e-1130.58Ras-related protein ralB-B OS=Xenopus laevis GN=ra... [more]
RAB17_HUMAN9.231e-1132.52Ras-related protein Rab-17 OS=Homo sapiens GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305105 ID=CB305105; Name=CB305105; organism=Citrus sinensis; type=EST; length=638bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGAAAANNNACAATTTA
ATAACATTTGCCACTATCAAGCAACACATCATTTGTACATGCCATATAAT
AGTAATATAGACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTA
GTAAAGCAATCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGG
TTCCTACAACGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGA
AGGATAAGACAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACC
GGTTGTCCTTTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGG
TTGACTTGCCATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTT
GTTCCACGTTCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCA
ATTTCATCAGCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATC
AGTGAGATCACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTG
CATAGCGATCAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCT
TGGTCTGTAACATCATAAACAATGATAATGCCATGTGC
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