CB305105

Overview
NameCB305105
Unique NameCB305105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2148 contig Csv1_Contig2148:391..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.613e-23
Identity = 55/136 (40.44%), Postives = 84/136 (61.76%), Query Frame = -1
Query:  231 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCST*SFVLSFIACICL 638
            A GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+ DK+ VS E  +  A + GI FMETSAK ++NVE AF  +  DIK +M  +   N+ +     +K  P  QK S         SF  C+ L
Sbjct:   81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKRS---------SFFRCVLL 207          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.613e-23
Identity = 55/136 (40.44%), Postives = 84/136 (61.76%), Query Frame = -1
Query:  231 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCST*SFVLSFIACICL 638
            A GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+ DK+ VS E  +  A + GI FMETSAK ++NVE AF  +  DIK +M  +   N+ +     +K  P  QK S         SF  C+ L
Sbjct:   81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKRS---------SFFRCVLL 207          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.719e-23
Identity = 55/136 (40.44%), Postives = 84/136 (61.76%), Query Frame = -1
Query:  231 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCST*SFVLSFIACICL 638
            A GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+ DK+ VS E  +  A + GI FMETSAK ++NVE AF  +  DIK +M  +   N+ +     +K  P  QK S         SF  C+ L
Sbjct:   81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKRS---------SFFRCVLL 207          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.051e-22
Identity = 54/136 (39.71%), Postives = 81/136 (59.56%), Query Frame = -1
Query:  231 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCST*SFVLSFIACICL 638
            A GI++VYD+T+++SF N++ W+  I+ +AS +V K+++GNKCD  DK+ VS E  +  A   GI FMETSAK ++N+E AF  +  DIK +M  +   N+ +     +K  P  QK S         SF  C+ L
Sbjct:   81 AMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKKS---------SFFRCVLL 207          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.051e-22
Identity = 53/124 (42.74%), Postives = 80/124 (64.52%), Query Frame = -1
Query:  273 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQK--ASCCS 638
            A  ++++YD+T+Q SF+N++ WL EI  YA  +V  +L+GNK D++ ++V+  E  +  A E G+PFMETSAK  MNVE AF+A+  ++K R   QP       P+ QI+    +QK  +SCCS
Sbjct:  103 AQALLLLYDITNQSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADVSSERVIRSEDGETLAREYGVPFMETSAKTGMNVELAFLAIAKELKYRAGRQP-----DEPSFQIRDYVESQKKRSSCCS 221          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.373e-22
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = -1
Query:  309 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIK 638
            A GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A   A E GI F ETSAK SMNV++AF ++  DI  +   +   NN +PP+  +K
Sbjct:   81 AMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLKNNNKPPSTDLK 190          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.342e-22
Identity = 50/92 (54.35%), Postives = 67/92 (72.83%), Query Frame = -1
Query:  360 HGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 635
            HG+IIVYDVTDQ SF NV  W+ +I RYA+ENV K+++GNK DL  +KVV    A+ FAD + IPF E SAK S+N+E+AF+++     NR+
Sbjct:   80 HGVIIVYDVTDQRSFENVPSWIEDIRRYANENVIKIIIGNKNDLVSQKVVDPFLAQEFADSLDIPFKEISAKQSINIEEAFISLVKLCINRI 171          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.814e-22
Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = -1
Query:  309 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIK 638
            A GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A   A E GI F ETSAK SMNV++AF ++  DI  +   + + N  +PP+  +K
Sbjct:   81 AMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNKPPSTDLK 190          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.900e-22
Identity = 54/136 (39.71%), Postives = 83/136 (61.03%), Query Frame = -1
Query:  231 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCST*SFVLSFIACICL 638
            A GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNK D+ DK+ VS E  +  A + GI FMETSAK ++NVE AF  +  DIK +M  +   N+ +     +K  P  QK S         SF  C+ L
Sbjct:   81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKRS---------SFFRCVLL 207          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.162e-21
Identity = 51/124 (41.13%), Postives = 80/124 (64.52%), Query Frame = -1
Query:  273 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQK--ASCCS 638
            A  ++++YD+T++ SF+N++ WL EI  YA  +V  +L+GNK D++ ++V+  E  +  A E G+PF+ETSAK  MNVE AF+A+  ++K R   Q     A  P+ QI+    +QK  +SCCS
Sbjct:  103 AQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQ-----ADEPSFQIRDYVESQKKRSSCCS 221          
The following BLAST results are available for this feature:
BLAST of CB305105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
RAB8A_HUMAN3.613e-2340.44Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA3.613e-2340.44Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_BOVIN4.719e-2340.44Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB8A_CHICK1.051e-2239.71Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB37_MOUSE1.051e-2242.74Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
RAB13_BOVIN1.373e-2246.36Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RABF1_DICDI2.342e-2254.35Ras-related protein RabF1 OS=Dictyostelium discoid... [more]
RAB13_HUMAN6.814e-2245.45Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB8A_PONAB8.900e-2239.71Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB37_HUMAN1.162e-2141.13Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305105 ID=CB305105; Name=CB305105; organism=Citrus sinensis; type=EST; length=638bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGAAAANNNACAATTTA
ATAACATTTGCCACTATCAAGCAACACATCATTTGTACATGCCATATAAT
AGTAATATAGACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTA
GTAAAGCAATCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGG
TTCCTACAACGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGA
AGGATAAGACAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACC
GGTTGTCCTTTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGG
TTGACTTGCCATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTT
GTTCCACGTTCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCA
ATTTCATCAGCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATC
AGTGAGATCACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTG
CATAGCGATCAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCT
TGGTCTGTAACATCATAAACAATGATAATGCCATGTGC
back to top