CB305105

Overview
NameCB305105
Unique NameCB305105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2148 contig Csv1_Contig2148:391..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.417e-21
Identity = 43/93 (46.24%), Postives = 68/93 (73.12%), Query Frame = -1
Query:  360 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 638
            A GI++VYD+T+++SF+N+K W+  I+ +AS +V ++++GNKCD+ DK+ VS E  +  A + GI F+ETSAK S NVE+AF  +  DI  ++
Sbjct:   81 AMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKL 173          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.417e-21
Identity = 43/93 (46.24%), Postives = 68/93 (73.12%), Query Frame = -1
Query:  360 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 638
            A GI++VYD+T+++SF+N+K W+  I+ +AS +V ++++GNKCD+ DK+ VS E  +  A + GI F+ETSAK S NVE+AF  +  DI  ++
Sbjct:   81 AMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKL 173          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.417e-21
Identity = 43/93 (46.24%), Postives = 68/93 (73.12%), Query Frame = -1
Query:  360 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 638
            A GI++VYD+T+++SF+N+K W+  I+ +AS +V ++++GNKCD+ DK+ VS E  +  A + GI F+ETSAK S NVE+AF  +  DI  ++
Sbjct:   81 AMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKL 173          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.534e-21
Identity = 49/122 (40.16%), Postives = 71/122 (58.20%), Query Frame = -1
Query:  273 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCS 638
            A   I+VYD+T++ESF   K W+ E+ R AS N+   L GNK DL +K+ V ++ A+++AD+  + FMETSAK SMNV + FMA+   +       P  N+AR   V +       +  CCS
Sbjct:   93 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSARGRGVDLTEPTQPTRNQCCS 214          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.840e-21
Identity = 48/122 (39.34%), Postives = 71/122 (58.20%), Query Frame = -1
Query:  273 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCS 638
            A   I+VYD+T++ESF   K W+ E+ R AS N+   L GNK DL +K+ V ++ A+++AD+  + FMETSAK SMNV + FMA+   +       P  N+ R   V +       ++ CCS
Sbjct:   93 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSTRGRGVDLTEPTQPTRSQCCS 214          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 9.840e-21
Identity = 50/122 (40.98%), Postives = 78/122 (63.93%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR-PPTVQIKGQPVNQKASCC 638
            AH ++++YD+T+++SF+N++ WL EI  YA ++V  +L+GNK D T ++VV  E  +  A E G+PFMETSAK  +NV+ AF A+  ++K R    P+    R    V+ +G+ V    SCC
Sbjct:  138 AHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELKQRSTKAPSEPRFRLHDYVKREGRGV----SCC 255          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.285e-20
Identity = 49/122 (40.16%), Postives = 76/122 (62.30%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI-KNRMASQPAMNNARPPTVQIKGQPVNQKASCC 638
            A GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+ DK+VV     +  A E GI F ETSAK ++N+E+AF+ +  DI +     +P   N+    +   G     K+ CC
Sbjct:   82 AMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEP---NSENVDISSGGGVTGWKSKCC 200          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.678e-20
Identity = 48/122 (39.34%), Postives = 71/122 (58.20%), Query Frame = -1
Query:  273 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCS 638
            A   I+VYD+T++ESF   K W+ E+ R AS N+   L GNK DL +K+ V ++ A+++AD+  + FMETSAK SMNV + FMA+   +       P +N  R   V +       ++ CCS
Sbjct:   93 AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGINCTRGRGVDLTEPTQPTRSQCCS 214          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.678e-20
Identity = 50/122 (40.98%), Postives = 78/122 (63.93%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR-PPTVQIKGQPVNQKASCC 638
            AH ++++YD+T+++SF+N++ WL EI  YA ++V  +L+GNK D T  +VV  E  +  A E G+PFMETSA+  +NV+ AF A+  ++K R A  P+    R    V+ +G+ V    SCC
Sbjct:  141 AHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKELKQRSAKAPSEPRFRLHDYVKREGRGV----SCC 258          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.192e-20
Identity = 48/120 (40.00%), Postives = 73/120 (60.83%), Query Frame = -1
Query:  279 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASC 638
            A GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A+  A E  I F ETSAK S+NV++AF ++  DI  +   + + N+++P +  +K         C
Sbjct:   81 AMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGNSSKPSSTDLKVSDKKNSNKC 200          
The following BLAST results are available for this feature:
BLAST of CB305105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
RAB8B_PONAB4.417e-2146.24Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE4.417e-2146.24Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_HUMAN4.417e-2146.24Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB5A_HUMAN7.534e-2140.16Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_BOVIN9.840e-2139.34Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]
RAB26_RAT9.840e-2140.98Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
RAB10_CHICK1.285e-2040.16Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RAB5A_PIG1.678e-2039.34Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB26_MOUSE1.678e-2040.98Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RAB13_RAT2.192e-2040.00Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305105 ID=CB305105; Name=CB305105; organism=Citrus sinensis; type=EST; length=638bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGAAAANNNACAATTTA
ATAACATTTGCCACTATCAAGCAACACATCATTTGTACATGCCATATAAT
AGTAATATAGACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTA
GTAAAGCAATCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGG
TTCCTACAACGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGA
AGGATAAGACAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACC
GGTTGTCCTTTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGG
TTGACTTGCCATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTT
GTTCCACGTTCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCA
ATTTCATCAGCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATC
AGTGAGATCACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTG
CATAGCGATCAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCT
TGGTCTGTAACATCATAAACAATGATAATGCCATGTGC
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