CB305105

Overview
NameCB305105
Unique NameCB305105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2148 contig Csv1_Contig2148:391..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.378e-20
Identity = 50/126 (39.68%), Postives = 77/126 (61.11%), Query Frame = -1
Query:  279 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA-----SQPAMNNARP-PTVQIKGQPVNQKASC 638
            A G I++YD+T++ESFN V+ W  +I  Y+ +N   LLVGNKCD+ D++VVS E  +  AD +G  F E SAKD++NV+Q F  +   I  +M+     + PA+  A+  P +  +  P +Q  +C
Sbjct:   95 AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLSDQQVPPHQDCAC 220          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 6.378e-20
Identity = 50/126 (39.68%), Postives = 77/126 (61.11%), Query Frame = -1
Query:  279 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA-----SQPAMNNARP-PTVQIKGQPVNQKASC 638
            A G I++YD+T++ESFN V+ W  +I  Y+ +N   LLVGNKCD+ D++VVS E  +  AD +G  F E SAKD++NV+Q F  +   I  +M+     + PA+  A+  P +  +  P +Q  +C
Sbjct:   95 AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLTDQQAPPHQDCAC 220          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.378e-20
Identity = 47/110 (42.73%), Postives = 71/110 (64.55%), Query Frame = -1
Query:  309 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIK 638
            A GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A+  A E  I F ETSAK S+NV++AF ++  DI  +   + +  N++P +  +K
Sbjct:   81 AMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGTNSKPSSTGLK 190          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB5B_CHICK (Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.421e-19
Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = -1
Query:  273 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCS 638
            A   I+VYD+T+QE+F   K W+ E+ R AS ++   L GNK DL  K++V YE A+A+AD+  + FMETSAK +MNV   F+A+   +        +    R   V +  Q    K+ CCS
Sbjct:   93 AQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQSTSGAAGRSRGVDLHEQTQQNKSQCCS 214          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.856e-19
Identity = 40/94 (42.55%), Postives = 69/94 (73.40%), Query Frame = -1
Query:  357 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA 638
            A G I++YDVT+++SFN+V+ W+ +I  Y+ +N   +LVGNKCD+ D++V+S+E  +  AD++G+ F ETSAK+++NV+  F  +   I ++M+
Sbjct:   94 AMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMS 187          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.856e-19
Identity = 49/129 (37.98%), Postives = 78/129 (60.47%), Query Frame = -1
Query:  279 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQ---------PVNQKASC 638
            A G I++YD+T++ESFN+V+ W  +I  Y+ EN   +LVGNKCD+  ++VVS +  +  AD++G+ F ETSAK+++NV+  F  +   I ++MA     +  + P  Q KGQ         P  Q+ +C
Sbjct:   95 AMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICDKMAE----SLDKDPQQQPKGQKLEANPTQKPAQQQCNC 219          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.424e-19
Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = -1
Query:  273 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCS 638
            A   I+VYD+T+QE+F   K W+ E+ R AS ++   L GNK DL +K++V YE A+A+AD+  + FMETSAK +MNV   F+A+   +             R   V +  Q    K+ CCS
Sbjct:   93 AQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCS 214          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.424e-19
Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = -1
Query:  273 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCS 638
            A   I+VYD+T+QE+F   K W+ E+ R AS ++   L GNK DL +K++V YE A+A+AD+  + FMETSAK +MNV   F+A+   +             R   V +  Q    K+ CCS
Sbjct:   93 AQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCS 214          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.424e-19
Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = -1
Query:  273 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCS 638
            A   I+VYD+T+QE+F   K W+ E+ R AS ++   L GNK DL +K++V YE A+A+AD+  + FMETSAK +MNV   F+A+   +             R   V +  Q    K+ CCS
Sbjct:   93 AQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCS 214          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB26_HUMAN (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.424e-19
Identity = 50/122 (40.98%), Postives = 75/122 (61.48%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR-PPTVQIKGQPVNQKASCC 638
            AH ++++YDVT++ SF+N++ WL EI  YA  +V  +L+GNK D   ++VV  E  +  A E G+PFMETSAK  +NV+ AF A+  ++K R    P+    R    V+ +G    + ASCC
Sbjct:  137 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQRSMKAPSEPRFRLHDYVKREG----RGASCC 254          
The following BLAST results are available for this feature:
BLAST of CB305105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
RAB3A_HUMAN6.378e-2039.68Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
RAB3A_BOVIN6.378e-2039.68Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A ... [more]
RAB13_MOUSE6.378e-2042.73Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB5B_CHICK1.421e-1939.34Ras-related protein Rab-5B OS=Gallus gallus GN=RAB... [more]
RAB3_DROME1.856e-1942.55Ras-related protein Rab-3 OS=Drosophila melanogast... [more]
RAB3_CAEEL1.856e-1937.98Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RAB5B_PONAB2.424e-1939.34Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5... [more]
RAB5B_MOUSE2.424e-1939.34Ras-related protein Rab-5B OS=Mus musculus GN=Rab5... [more]
RAB5B_HUMAN2.424e-1939.34Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]
RAB26_HUMAN2.424e-1940.98Ras-related protein Rab-26 OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305105 ID=CB305105; Name=CB305105; organism=Citrus sinensis; type=EST; length=638bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGAAAANNNACAATTTA
ATAACATTTGCCACTATCAAGCAACACATCATTTGTACATGCCATATAAT
AGTAATATAGACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTA
GTAAAGCAATCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGG
TTCCTACAACGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGA
AGGATAAGACAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACC
GGTTGTCCTTTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGG
TTGACTTGCCATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTT
GTTCCACGTTCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCA
ATTTCATCAGCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATC
AGTGAGATCACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTG
CATAGCGATCAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCT
TGGTCTGTAACATCATAAACAATGATAATGCCATGTGC
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