CB305105

Overview
NameCB305105
Unique NameCB305105
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2148 contig Csv1_Contig2148:391..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.134e-19
Identity = 47/124 (37.90%), Postives = 79/124 (63.71%), Query Frame = -1
Query:  279 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA----SQPAMNNARPPTVQIKGQPVNQKASC 638
            A G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+ D++V+S E  +   +++G  F ETSAKD++NV+Q F  +   I ++M+    + PA+  A+  T ++K  P   + +C
Sbjct:  103 AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQNT-RLKETPPPPQPNC 225          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.134e-19
Identity = 47/124 (37.90%), Postives = 79/124 (63.71%), Query Frame = -1
Query:  279 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA----SQPAMNNARPPTVQIKGQPVNQKASC 638
            A G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+ D++V+S E  +   +++G  F ETSAKD++NV+Q F  +   I ++M+    + PA+  A+  T ++K  P   + +C
Sbjct:  103 AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQNT-RLKETPPPPQPNC 225          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.134e-19
Identity = 49/110 (44.55%), Postives = 75/110 (68.18%), Query Frame = -1
Query:  312 AHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQI 638
            AHGII VYDVT++ SF+++ + WL +ID+YA+ NV KLL+GNK DL + +VVS + AK  A++  + ++E SAK   NVE+AF  +   +K+++   P  +NA   TV +
Sbjct:   80 AHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYP--SNAPASTVSL 187          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.134e-19
Identity = 42/89 (47.19%), Postives = 64/89 (71.91%), Query Frame = -1
Query:  372 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI 638
            A GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+ DK+VV     +  A E  I F ETSAK ++N+E+AF+ +  DI
Sbjct:   82 AMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.399e-19
Identity = 48/124 (38.71%), Postives = 78/124 (62.90%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQ--PAMNNARPPTVQIK-GQPVNQKASCC 638
            A GII+VYDVTD+ +F N+KQW   ++ +A++    LLVGNK D+ D +VV+YE  +A A E+G+PF+E+SAK+  NV + F  +   I+ ++ S      N+ +   + I   +  + K++CC
Sbjct:   93 AMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVGNKSDM-DTRVVTYEQGEALAKELGLPFIESSAKNDDNVNEIFFTLARLIQEKIDSNKLSGPNSGKDGNISINANKGDSSKSNCC 215          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.399e-19
Identity = 47/124 (37.90%), Postives = 78/124 (62.90%), Query Frame = -1
Query:  279 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA----SQPAMNNARPPTVQIKGQPVNQKASC 638
            A G I++YD+T++ESFN V+ W  +I  Y+ +N   +L GNKCD+ D++VVS E  +   +++G  F ETSAKD++NV+Q F  +   I ++M+    + PA+  A+  T ++K  P   + +C
Sbjct:  103 AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQST-RLKETPPPPQPNC 225          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.399e-19
Identity = 47/124 (37.90%), Postives = 78/124 (62.90%), Query Frame = -1
Query:  279 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA----SQPAMNNARPPTVQIKGQPVNQKASC 638
            A G I++YD+T++ESFN V+ W  +I  Y+ +N   +L GNKCD+ D++VVS E  +   +++G  F ETSAKD++NV+Q F  +   I ++M+    + PA+  A+  T ++K  P   + +C
Sbjct:  103 AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQST-RLKETPPPPQPNC 225          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.052e-19
Identity = 49/110 (44.55%), Postives = 74/110 (67.27%), Query Frame = -1
Query:  312 AHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQI 638
            AHGII VYDVT++ SF+++ + WL +ID+YA+ NV KLL+GNK DL D +VV  + AK  A++  + ++E SAK   NVE+AF  +   +K+++   P  +NA   TV +
Sbjct:   80 AHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYP--SNAPTSTVNL 187          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.210e-19
Identity = 47/135 (34.81%), Postives = 82/135 (60.74%), Query Frame = -1
Query:  270 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI-----KNRMASQPAMNNARPPTVQIK-------GQPVNQKASCCST 638
            A G ++VYD+T +++F+++ +WL E+  +A  N+  +L+GNK DL D++ V  E AK FA + G+ F+ETSA ++ N+E AF+ +  +I     K  +A+    +N  P ++  K       GQ + +K +CCS+
Sbjct:   88 AVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDNQSNGNPASLTGKKILVPGPGQVIPEKKACCSS 222          
BLAST of CB305105 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.052e-18
Identity = 47/124 (37.90%), Postives = 77/124 (62.10%), Query Frame = -1
Query:  276 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQP--AMNNARPPTVQI-KGQPVNQKASCC 638
            A GII+VYDVTD+ +F N+KQW   ++ +A++    LLVGNK D+ + +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +   I+ ++ S     + N +   + I  G   + K++CC
Sbjct:   93 AMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGNISINSGSGNSSKSNCC 215          
The following BLAST results are available for this feature:
BLAST of CB305105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
RAB3C_HUMAN4.134e-1937.90Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
RAB3C_BOVIN4.134e-1937.90Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]
RAB1_THEPA4.134e-1944.55Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RAB10_DISOM4.134e-1947.19Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
SEC4_CANGA5.399e-1938.71Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]
RAB3C_RAT5.399e-1937.90Ras-related protein Rab-3C OS=Rattus norvegicus GN... [more]
RAB3C_MOUSE5.399e-1937.90Ras-related protein Rab-3C OS=Mus musculus GN=Rab3... [more]
RAB1_THEAN7.052e-1944.55Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
RB11D_TOBAC9.210e-1934.81Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
SEC4_YEAST2.052e-1837.90Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_C02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_C02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305105 ID=CB305105; Name=CB305105; organism=Citrus sinensis; type=EST; length=638bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGAAAANNNACAATTTA
ATAACATTTGCCACTATCAAGCAACACATCATTTGTACATGCCATATAAT
AGTAATATAGACTGAAAGAATTGAAATTTCACAATAACTTACAAAAACTA
GTAAAGCAATCCGTCATATGATTCATGGGGTAGGAATAGTTTTTCACTGG
TTCCTACAACGTGATTGAGAAAGCTACCCATAAACAAATGCACGCAATGA
AGGATAAGACAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGTTCACC
GGTTGTCCTTTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATTGCAGG
TTGACTTGCCATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAAAGCTT
GTTCCACGTTCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGATGCCA
ATTTCATCAGCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTCTTATC
AGTGAGATCACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTCACTTG
CATAGCGATCAATTTCATTCAACCACTGCTTAACGTTGTTGAAGCTCTCT
TGGTCTGTAACATCATAAACAATGATAATGCCATGTGC
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