CB305108
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_PANTR (60S ribosomal protein L27a OS=Pan troglodytes GN=RPL27A PE=2 SV=3) HSP 1 Score: 125.561 bits (314), Expect = 1.223e-28 Identity = 60/105 (57.14%), Postives = 79/105 (75.24%), Query Frame = -3 Query: 185 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVL 490 I FDKYHPG+FGKVGM+++H RN+ CP VN+DKLW++V + + A+K+ P+IDV + GY+KVLGKG LP+ QPV+VKAK S+ AE+KIK GGA VL Sbjct: 43 INFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVL 146
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_MOUSE (60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=2 SV=4) HSP 1 Score: 124.79 bits (312), Expect = 2.086e-28 Identity = 61/107 (57.01%), Postives = 79/107 (73.83%), Query Frame = -3 Query: 179 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 490 I FDKYHPG+FGKVGMR++H RN+ CP VN+DK W++V + + A+K+ P+IDV + GY+KVLGKG LP+ QPV+VKAK S+ AE+KIK GGA VL A Sbjct: 43 INFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL28_YEAST (60S ribosomal protein L28 OS=Saccharomyces cerevisiae GN=RPL28 PE=1 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 1.352e-27 Identity = 60/108 (55.56%), Postives = 78/108 (72.22%), Query Frame = -3 Query: 179 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVK----AKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 490 I DKYHPG+FGKVGMRYFHK + F P++N+DKLW+++P+D + ASK+ P+ID GY K+LGKG +P N PV+VKA+ VSK AE+KI+ AGG V L A Sbjct: 43 INMDKYHPGYFGKVGMRYFHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIP-NVPVIVKARFVSKLAEEKIRAAGGVVELIA 149
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_EUPCR (60S ribosomal protein L27a OS=Euplotes crassus GN=RPL27A PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 1.766e-27 Identity = 59/102 (57.84%), Postives = 78/102 (76.47%), Query Frame = -3 Query: 179 KYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQD--VKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 478 KYHPG GK GMR+FH +RN+++CP +N+ KLWS+V ++ KA+ K V +IDV + GY+KVLGKG+LPE P+VVKAKL + TAEK+IK+ GGA VL A Sbjct: 47 KYHPGHIGKHGMRHFHLMRNQYYCPSINLSKLWSLVTEEERQKAQTDKSKVILIDVVKHGYYKVLGKGLLPE-VPLVVKAKLFTPTAEKRIKQVGGACVLRA 147
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_XENLA (60S ribosomal protein L27a OS=Xenopus laevis GN=rpl27a PE=2 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 3.012e-27 Identity = 59/107 (55.14%), Postives = 77/107 (71.96%), Query Frame = -3 Query: 179 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVK---AKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 490 I FDKYHPG+FGKVGMR++H +N+ CP +N+DKLW++V + + AK + P+ID GY+KVLGKG LP+ QPV+VKAK S+ AE+KIK GGA VL A Sbjct: 43 INFDKYHPGYFGKVGMRHYHLKKNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLPK-QPVIVKAKFFSRKAEEKIKSVGGACVLGA 148
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL28_NEUCR (60S ribosomal protein L28 OS=Neurospora crassa GN=rpl-28 PE=2 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 1.952e-26 Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = -3 Query: 179 DKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAK----ASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 481 DKYHPG+FGKVGMR+FH LRN PI+NI+KLW++VP + + K A+ + P+ID+ GY K+LGKG LP+ P+VV+A+ VS AE+KIKEAGG + L A Sbjct: 46 DKYHPGYFGKVGMRHFHLLRNHQWAPILNIEKLWTLVPAEAREKYVSGAATETAPVIDLLSHGYAKLLGKGRLPQ-VPIVVRARYVSAEAERKIKEAGGVIELVA 149
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_ERYGR (60S ribosomal protein L27a OS=Erysiphe graminis subsp. hordei PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.653e-25 Identity = 56/105 (53.33%), Postives = 76/105 (72.38%), Query Frame = -3 Query: 179 DKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVK----AKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 481 DKYHPG+FGKVGMRYFHK N F P++N++KLWS++P + + + + D +P+ID+ GY KVLGKG +P+ P+VV+A+ SK AE+KI EAGG V L A Sbjct: 46 DKYHPGYFGKVGMRYFHKQGNHFWKPVLNLEKLWSLIPAEKREAYLSSTNPDVIPVIDLLPLGYSKVLGKGRIPK-VPLVVRARWFSKEAERKITEAGGVVELVA 149
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL28B_SCHPO (60S ribosomal protein L28-B OS=Schizosaccharomyces pombe GN=rpl28b PE=1 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 4.809e-25 Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = -3 Query: 179 FDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 484 FDKYHPG+FGKVGMR FH ++N P VN+D+LW++VP + + K N P+I+V Q GY KVLGKG LP+ PV+++ + VS+ AE+KIK+AGG V L A Sbjct: 45 FDKYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDT-PVIIQTRYVSRRAEEKIKQAGGVVELIA 148
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL28A_SCHPO (60S ribosomal protein L28-A OS=Schizosaccharomyces pombe GN=rpl28a PE=2 SV=3) HSP 1 Score: 113.62 bits (283), Expect = 4.809e-25 Identity = 57/105 (54.29%), Postives = 75/105 (71.43%), Query Frame = -3 Query: 179 FDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 484 FDKYHPG+FGKVGMR FH ++N P VN+D+LW+++P + + K N P+I+V Q GY KVLGKG LPE PV+V+ + VS+ AE+KIK+AGG V L A Sbjct: 45 FDKYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPET-PVIVQTRYVSRRAEEKIKQAGGVVELIA 148
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: R27A2_ENTHI (60S ribosomal protein L27a-2/4 OS=Entamoeba histolytica GN=rpl27a-2 PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 4.809e-25 Identity = 55/106 (51.89%), Postives = 75/106 (70.75%), Query Frame = -3 Query: 179 FDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASK----DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 484 F +HP +FGK GMR FH NK++CP +N+D LWS+V +DV+A+ + VP+ID + GYFKVLGKG LP+ QPV+V+A+ S+ A++KIK GGA LTA Sbjct: 45 FTTFHPDYFGKHGMRVFHLKANKYYCPSINVDSLWSLVGKDVQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQKIKAVGGACELTA 149 The following BLAST results are available for this feature:
BLAST of CB305108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >CB305108 ID=CB305108; Name=CB305108; organism=Citrus sinensis; type=EST; length=492bpback to top |