CB305108

Overview
NameCB305108
Unique NameCB305108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_PANTR (60S ribosomal protein L27a OS=Pan troglodytes GN=RPL27A PE=2 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 1.223e-28
Identity = 60/105 (57.14%), Postives = 79/105 (75.24%), Query Frame = -3
Query:  185 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVL 490
            I FDKYHPG+FGKVGM+++H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL
Sbjct:   43 INFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVL 146          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_MOUSE (60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=2 SV=4)

HSP 1 Score: 124.79 bits (312), Expect = 2.086e-28
Identity = 61/107 (57.01%), Postives = 79/107 (73.83%), Query Frame = -3
Query:  179 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 490
            I FDKYHPG+FGKVGMR++H  RN+  CP VN+DK W++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   43 INFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL28_YEAST (60S ribosomal protein L28 OS=Saccharomyces cerevisiae GN=RPL28 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.352e-27
Identity = 60/108 (55.56%), Postives = 78/108 (72.22%), Query Frame = -3
Query:  179 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVK----AKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 490
            I  DKYHPG+FGKVGMRYFHK +  F  P++N+DKLW+++P+D +      ASK+  P+ID    GY K+LGKG +P N PV+VKA+ VSK AE+KI+ AGG V L A
Sbjct:   43 INMDKYHPGYFGKVGMRYFHKQQAHFWKPVLNLDKLWTLIPEDKRDQYLKSASKETAPVIDTLAAGYGKILGKGRIP-NVPVIVKARFVSKLAEEKIRAAGGVVELIA 149          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_EUPCR (60S ribosomal protein L27a OS=Euplotes crassus GN=RPL27A PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.766e-27
Identity = 59/102 (57.84%), Postives = 78/102 (76.47%), Query Frame = -3
Query:  179 KYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQD--VKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 478
            KYHPG  GK GMR+FH +RN+++CP +N+ KLWS+V ++   KA+  K  V +IDV + GY+KVLGKG+LPE  P+VVKAKL + TAEK+IK+ GGA VL A
Sbjct:   47 KYHPGHIGKHGMRHFHLMRNQYYCPSINLSKLWSLVTEEERQKAQTDKSKVILIDVVKHGYYKVLGKGLLPE-VPLVVKAKLFTPTAEKRIKQVGGACVLRA 147          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_XENLA (60S ribosomal protein L27a OS=Xenopus laevis GN=rpl27a PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 3.012e-27
Identity = 59/107 (55.14%), Postives = 77/107 (71.96%), Query Frame = -3
Query:  179 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVK---AKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 490
            I FDKYHPG+FGKVGMR++H  +N+  CP +N+DKLW++V +  +   AK  +   P+ID    GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   43 INFDKYHPGYFGKVGMRHYHLKKNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLPK-QPVIVKAKFFSRKAEEKIKSVGGACVLGA 148          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL28_NEUCR (60S ribosomal protein L28 OS=Neurospora crassa GN=rpl-28 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.952e-26
Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = -3
Query:  179 DKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAK----ASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 481
            DKYHPG+FGKVGMR+FH LRN    PI+NI+KLW++VP + + K    A+ +  P+ID+   GY K+LGKG LP+  P+VV+A+ VS  AE+KIKEAGG + L A
Sbjct:   46 DKYHPGYFGKVGMRHFHLLRNHQWAPILNIEKLWTLVPAEAREKYVSGAATETAPVIDLLSHGYAKLLGKGRLPQ-VPIVVRARYVSAEAERKIKEAGGVIELVA 149          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_ERYGR (60S ribosomal protein L27a OS=Erysiphe graminis subsp. hordei PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.653e-25
Identity = 56/105 (53.33%), Postives = 76/105 (72.38%), Query Frame = -3
Query:  179 DKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVK----AKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 481
            DKYHPG+FGKVGMRYFHK  N F  P++N++KLWS++P + +    +  + D +P+ID+   GY KVLGKG +P+  P+VV+A+  SK AE+KI EAGG V L A
Sbjct:   46 DKYHPGYFGKVGMRYFHKQGNHFWKPVLNLEKLWSLIPAEKREAYLSSTNPDVIPVIDLLPLGYSKVLGKGRIPK-VPLVVRARWFSKEAERKITEAGGVVELVA 149          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL28B_SCHPO (60S ribosomal protein L28-B OS=Schizosaccharomyces pombe GN=rpl28b PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.809e-25
Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = -3
Query:  179 FDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 484
            FDKYHPG+FGKVGMR FH ++N    P VN+D+LW++VP + + K    N    P+I+V Q GY KVLGKG LP+  PV+++ + VS+ AE+KIK+AGG V L A
Sbjct:   45 FDKYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDT-PVIIQTRYVSRRAEEKIKQAGGVVELIA 148          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL28A_SCHPO (60S ribosomal protein L28-A OS=Schizosaccharomyces pombe GN=rpl28a PE=2 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 4.809e-25
Identity = 57/105 (54.29%), Postives = 75/105 (71.43%), Query Frame = -3
Query:  179 FDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 484
            FDKYHPG+FGKVGMR FH ++N    P VN+D+LW+++P + + K    N    P+I+V Q GY KVLGKG LPE  PV+V+ + VS+ AE+KIK+AGG V L A
Sbjct:   45 FDKYHPGYFGKVGMRRFHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPET-PVIVQTRYVSRRAEEKIKQAGGVVELIA 148          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: R27A2_ENTHI (60S ribosomal protein L27a-2/4 OS=Entamoeba histolytica GN=rpl27a-2 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.809e-25
Identity = 55/106 (51.89%), Postives = 75/106 (70.75%), Query Frame = -3
Query:  179 FDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASK----DNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 484
            F  +HP +FGK GMR FH   NK++CP +N+D LWS+V +DV+A+       + VP+ID  + GYFKVLGKG LP+ QPV+V+A+  S+ A++KIK  GGA  LTA
Sbjct:   45 FTTFHPDYFGKHGMRVFHLKANKYYCPSINVDSLWSLVGKDVQAQYKNAKVGEEVPVIDCVKHGYFKVLGKGFLPK-QPVIVRARYFSEKAQQKIKAVGGACELTA 149          
The following BLAST results are available for this feature:
BLAST of CB305108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL27A_PANTR1.223e-2857.1460S ribosomal protein L27a OS=Pan troglodytes GN=R... [more]
RL27A_MOUSE2.086e-2857.0160S ribosomal protein L27a OS=Mus musculus GN=Rpl2... [more]
RL28_YEAST1.352e-2755.5660S ribosomal protein L28 OS=Saccharomyces cerevis... [more]
RL27A_EUPCR1.766e-2757.8460S ribosomal protein L27a OS=Euplotes crassus GN=... [more]
RL27A_XENLA3.012e-2755.1460S ribosomal protein L27a OS=Xenopus laevis GN=rp... [more]
RL28_NEUCR1.952e-2655.2460S ribosomal protein L28 OS=Neurospora crassa GN=... [more]
RL27A_ERYGR1.653e-2553.3360S ribosomal protein L27a OS=Erysiphe graminis su... [more]
RL28B_SCHPO4.809e-2553.3360S ribosomal protein L28-B OS=Schizosaccharomyces... [more]
RL28A_SCHPO4.809e-2554.2960S ribosomal protein L28-A OS=Schizosaccharomyces... [more]
R27A2_ENTHI4.809e-2551.8960S ribosomal protein L27a-2/4 OS=Entamoeba histol... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_C07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_C07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305108 ID=CB305108; Name=CB305108; organism=Citrus sinensis; type=EST; length=492bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATAAAATGAGATTCAGGTC
ACATTTAATCATTAAGCGAGAGATATACCCAAAAAAAAAGATAAAAACAT
TGTGATTTAAATAAGTCTCAACAGATCCCAGAATAAAACAAAACCCCTAG
ACAAGGGAGAGTTACCAAAATAACCCTAAGCTGTGAGCACAACAGCGCCA
CCAGCCTCTTTGATCTTCTTCTCAGCGGTCTTAGAAACGAGCTTGGCCTT
GACAACGACGGGCTGGTTCTCCGGCAAAACACCTTTGCCCAAAACCTTAA
AGTAGCCGAACTGAGTGACATCAATCATCGGAACATTGTCCTTGCTGGCC
TTTGCTTTCACATCTTGCGGGACCATGGACCAGAGCTTGTCGATGTTGAC
GATGGGGCAGTGGAATTTGTTGCGGAGTTTGTGGAAGTACCTCATACCGA
CTTTACCAAAAAAACCAGGATGGTACTTGTCGAAAAGGATTC
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