CB305115

Overview
NameCB305115
Unique NameCB305115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length331
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_CALFG (Photosystem I reaction center subunit IX OS=Calycanthus floridus var. glaucus GN=psaJ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.853e-17
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = -3
Query:  132 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 263
            MRD+KTYLS APVL+TLWFGSLAGLLIEINRLFPDALTFPFFSF
Sbjct:    1 MRDIKTYLSTAPVLATLWFGSLAGLLIEINRLFPDALTFPFFSF 44          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_PIPCE (Photosystem I reaction center subunit IX OS=Piper cenocladum GN=psaJ PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.420e-17
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = -3
Query:  132 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 263
            MRD+KTYLSVAPVL+TLWFGSLAGLLIEINRLFPDAL FPFFSF
Sbjct:    1 MRDIKTYLSVAPVLATLWFGSLAGLLIEINRLFPDALVFPFFSF 44          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_LIRTU (Photosystem I reaction center subunit IX OS=Liriodendron tulipifera GN=psaJ PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.420e-17
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = -3
Query:  132 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 263
            MRD+KTYLSVAPVL+TLWFGSLAGLLIEINRLFPDAL FPFFSF
Sbjct:    1 MRDIKTYLSVAPVLTTLWFGSLAGLLIEINRLFPDALVFPFFSF 44          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_LEPVR (Photosystem I reaction center subunit IX OS=Lepidium virginicum GN=psaJ PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.420e-17
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = -3
Query:  138 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 263
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 42          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_IPOPU (Photosystem I reaction center subunit IX OS=Ipomoea purpurea GN=psaJ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.161e-17
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = -3
Query:  132 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 263
            MRD KTYLSVAPVLSTLWFG+LAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MRDFKTYLSVAPVLSTLWFGALAGLLIEINRFFPDALTFPFFSF 44          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_COFAR (Photosystem I reaction center subunit IX OS=Coffea arabica GN=psaJ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.161e-17
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = -3
Query:  132 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 263
            MRD KTYLSVAPVLSTLWFG+LAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MRDFKTYLSVAPVLSTLWFGALAGLLIEINRFFPDALTFPFFSF 44          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_PELHO (Photosystem I reaction center subunit IX OS=Pelargonium hortorum GN=psaJ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.392e-17
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = -3
Query:  132 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 263
            MRDLKTYLS APVLST+WFG+LAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MRDLKTYLSAAPVLSTIWFGALAGLLIEINRFFPDALTFPFFSF 44          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_DRIGR (Photosystem I reaction center subunit IX OS=Drimys granadensis GN=psaJ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.392e-17
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = -3
Query:  132 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 263
            MRD+KTYLSVAPVL+TLWFGSLAGLLIEINRLFPDALTF FFSF
Sbjct:    1 MRDIKTYLSVAPVLTTLWFGSLAGLLIEINRLFPDALTFSFFSF 44          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_CYCTA (Photosystem I reaction center subunit IX OS=Cycas taitungensis GN=psaJ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.392e-17
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = -3
Query:  132 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 263
            MRD+KTYLS APVL+TLWFGSLAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MRDIKTYLSTAPVLATLWFGSLAGLLIEINRFFPDALTFPFFSF 44          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_CUCSA (Photosystem I reaction center subunit IX OS=Cucumis sativus GN=psaJ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.392e-17
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = -3
Query:  132 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 263
            MRDLKTYLSVAPV+ST+WFG+LAGLLIEINRLFPDAL FPFFSF
Sbjct:    1 MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDALVFPFFSF 44          
The following BLAST results are available for this feature:
BLAST of CB305115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
PSAJ_CALFG1.853e-1793.18Photosystem I reaction center subunit IX OS=Calyca... [more]
PSAJ_PIPCE2.420e-1793.18Photosystem I reaction center subunit IX OS=Piper ... [more]
PSAJ_LIRTU2.420e-1793.18Photosystem I reaction center subunit IX OS=Liriod... [more]
PSAJ_LEPVR2.420e-17100.00Photosystem I reaction center subunit IX OS=Lepidi... [more]
PSAJ_IPOPU3.161e-1793.18Photosystem I reaction center subunit IX OS=Ipomoe... [more]
PSAJ_COFAR3.161e-1793.18Photosystem I reaction center subunit IX OS=Coffea... [more]
PSAJ_PELHO5.392e-1790.91Photosystem I reaction center subunit IX OS=Pelarg... [more]
PSAJ_DRIGR5.392e-1793.18Photosystem I reaction center subunit IX OS=Drimys... [more]
PSAJ_CYCTA5.392e-1790.91Photosystem I reaction center subunit IX OS=Cycas ... [more]
PSAJ_CUCSA5.392e-1790.91Photosystem I reaction center subunit IX OS=Cucumi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305115 ID=CB305115; Name=CB305115; organism=Citrus sinensis; type=EST; length=331bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAATTGTAAAACAAAAAAAC
GAAAAGAGGGGAAAGAGAGATTAGTCACAAATATTTGATTCTAGCTCTAA
TCTTCTTCACCCCGTTCCAGTTCAATAACTAAAATGAAAAAAAAGGAAAT
GTCAATGCGTCGGGGAATAAACGGTTGATTTCTATCAATAACCCTGCTAA
AGACCCGAACCATAGAGTACTTAGTACCGGGGCCACGGAAAGATATGTTT
TTAGATCTCGCATTGAAAATCCTCCTTCTTTTTTGTTTTTGTATTCCCTA
TTGGAATATATTATGGTAAGAGATGTATACC
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