CB305115

Overview
NameCB305115
Unique NameCB305115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length331
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_GUIAB (Photosystem I reaction center subunit IX OS=Guizotia abyssinica GN=psaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.569e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = -3
Query:  138 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 263
            MRDLKTYLSVAPVLSTLWFG+LAGLLIEINR FPDALTFPFF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGALAGLLIEINRFFPDALTFPFF 42          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_CICAR (Photosystem I reaction center subunit IX OS=Cicer arietinum GN=psaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.569e-16
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = -3
Query:  132 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 263
            MRDLKTYLSVAPV STLWF +LAGLLIEINRLFPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVASTLWFVALAGLLIEINRLFPDALTFPFFSF 44          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_OENPA (Photosystem I reaction center subunit IX OS=Oenothera parviflora GN=psaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.049e-16
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = -3
Query:  135 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFS 263
            MRDLKTYLSVAPVLS LWFG+LAGLLIEINR FPDALTFPFFS
Sbjct:    1 MRDLKTYLSVAPVLSALWFGALAGLLIEINRFFPDALTFPFFS 43          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_OENGL (Photosystem I reaction center subunit IX OS=Oenothera glazioviana GN=psaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.049e-16
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = -3
Query:  135 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFS 263
            MRDLKTYLSVAPVLS LWFG+LAGLLIEINR FPDALTFPFFS
Sbjct:    1 MRDLKTYLSVAPVLSALWFGALAGLLIEINRFFPDALTFPFFS 43          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_OENEH (Photosystem I reaction center subunit IX OS=Oenothera elata subsp. hookeri GN=psaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.049e-16
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = -3
Query:  135 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFS 263
            MRDLKTYLSVAPVLS LWFG+LAGLLIEINR FPDALTFPFFS
Sbjct:    1 MRDLKTYLSVAPVLSALWFGALAGLLIEINRFFPDALTFPFFS 43          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_OENBI (Photosystem I reaction center subunit IX OS=Oenothera biennis GN=psaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.049e-16
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = -3
Query:  135 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFS 263
            MRDLKTYLSVAPVLS LWFG+LAGLLIEINR FPDALTFPFFS
Sbjct:    1 MRDLKTYLSVAPVLSALWFGALAGLLIEINRFFPDALTFPFFS 43          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_OENAR (Photosystem I reaction center subunit IX OS=Oenothera argillicola GN=psaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.049e-16
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = -3
Query:  135 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFS 263
            MRDLKTYLSVAPVLS LWFG+LAGLLIEINR FPDALTFPFFS
Sbjct:    1 MRDLKTYLSVAPVLSALWFGALAGLLIEINRFFPDALTFPFFS 43          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_LOTJA (Photosystem I reaction center subunit IX OS=Lotus japonicus GN=psaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.049e-16
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = -3
Query:  132 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 263
            MRDLKTYLSVAPV+STLWF +LAGLLIEINRLFPDAL FPFFSF
Sbjct:    1 MRDLKTYLSVAPVVSTLWFAALAGLLIEINRLFPDALIFPFFSF 44          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_WHEAT (Photosystem I reaction center subunit IX OS=Triticum aestivum GN=psaJ PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.676e-16
Identity = 39/42 (92.86%), Postives = 42/42 (100.00%), Query Frame = -3
Query:  138 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 263
            MRD+KTYLSVAPVLSTLWFG+LAGLLIEINRLFPDAL+FPFF
Sbjct:    1 MRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALSFPFF 42          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_SORBI (Photosystem I reaction center subunit IX OS=Sorghum bicolor GN=psaJ PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.676e-16
Identity = 39/42 (92.86%), Postives = 42/42 (100.00%), Query Frame = -3
Query:  138 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 263
            MRD+KTYLSVAPVLSTLWFG+LAGLLIEINRLFPDAL+FPFF
Sbjct:    1 MRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALSFPFF 42          
The following BLAST results are available for this feature:
BLAST of CB305115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
PSAJ_GUIAB1.569e-1695.24Photosystem I reaction center subunit IX OS=Guizot... [more]
PSAJ_CICAR1.569e-1693.18Photosystem I reaction center subunit IX OS=Cicer ... [more]
PSAJ_OENPA2.049e-1693.02Photosystem I reaction center subunit IX OS=Oenoth... [more]
PSAJ_OENGL2.049e-1693.02Photosystem I reaction center subunit IX OS=Oenoth... [more]
PSAJ_OENEH2.049e-1693.02Photosystem I reaction center subunit IX OS=Oenoth... [more]
PSAJ_OENBI2.049e-1693.02Photosystem I reaction center subunit IX OS=Oenoth... [more]
PSAJ_OENAR2.049e-1693.02Photosystem I reaction center subunit IX OS=Oenoth... [more]
PSAJ_LOTJA2.049e-1690.91Photosystem I reaction center subunit IX OS=Lotus ... [more]
PSAJ_WHEAT2.676e-1692.86Photosystem I reaction center subunit IX OS=Tritic... [more]
PSAJ_SORBI2.676e-1692.86Photosystem I reaction center subunit IX OS=Sorghu... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305115 ID=CB305115; Name=CB305115; organism=Citrus sinensis; type=EST; length=331bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAATTGTAAAACAAAAAAAC
GAAAAGAGGGGAAAGAGAGATTAGTCACAAATATTTGATTCTAGCTCTAA
TCTTCTTCACCCCGTTCCAGTTCAATAACTAAAATGAAAAAAAAGGAAAT
GTCAATGCGTCGGGGAATAAACGGTTGATTTCTATCAATAACCCTGCTAA
AGACCCGAACCATAGAGTACTTAGTACCGGGGCCACGGAAAGATATGTTT
TTAGATCTCGCATTGAAAATCCTCCTTCTTTTTTGTTTTTGTATTCCCTA
TTGGAATATATTATGGTAAGAGATGTATACC
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