CB305115

Overview
NameCB305115
Unique NameCB305115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length331
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_ANGEV (Photosystem I reaction center subunit IX OS=Angiopteris evecta GN=psaJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.468e-14
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = -3
Query:  132 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 263
            M+D+KTYLS APVL+TLWFG LAGLLIEINR FPDAL FPFF F
Sbjct:    1 MQDVKTYLSTAPVLATLWFGFLAGLLIEINRFFPDALIFPFFQF 44          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_JASNU (Photosystem I reaction center subunit IX OS=Jasminum nudiflorum GN=psaJ PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.243e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = -3
Query:  150 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALT 263
            MRDLKTYLSVAPVLSTLWFG+LAGLLIEINR FPDALT
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGALAGLLIEINRFFPDALT 38          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_CUSOB (Photosystem I reaction center subunit IX OS=Cuscuta obtusiflora GN=psaJ PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.243e-13
Identity = 37/44 (84.09%), Postives = 37/44 (84.09%), Query Frame = -3
Query:  132 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 263
            MRD KTYLSVAPVLSTL  G  AG LIEINR FPDALTFPFFSF
Sbjct:    1 MRDFKTYLSVAPVLSTLSLGFFAGFLIEINRFFPDALTFPFFSF 44          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_MARPO (Photosystem I reaction center subunit IX OS=Marchantia polymorpha GN=psaJ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.769e-13
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = -3
Query:  138 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 263
            M+D+KTYLS APVL+TLWFG LAGLLIEINR FPDAL  PFF
Sbjct:    1 MQDVKTYLSTAPVLATLWFGFLAGLLIEINRFFPDALVLPFF 42          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_CUSGR (Photosystem I reaction center subunit IX OS=Cuscuta gronovii GN=psaJ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.769e-13
Identity = 36/44 (81.82%), Postives = 37/44 (84.09%), Query Frame = -3
Query:  132 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 263
            MRD KTYLSVAPVLSTL  G L G LIE+NR FPDALTFPFFSF
Sbjct:    1 MRDFKTYLSVAPVLSTLSLGFLTGFLIEMNRFFPDALTFPFFSF 44          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_CUSRE (Photosystem I reaction center subunit IX OS=Cuscuta reflexa GN=psaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.616e-13
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = -3
Query:  138 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 263
            MR  KTYLS APVLSTLW G+LA LLIEINR FPDALTFPFF
Sbjct:    1 MRYFKTYLSAAPVLSTLWLGALAALLIEINRFFPDALTFPFF 42          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_GNEPA (Photosystem I reaction center subunit IX OS=Gnetum parvifolium GN=psaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.374e-12
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = -3
Query:  141 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPF 263
            M+D+KTYLS APVL+T WFG LAGLLIEINR FPDALTF F
Sbjct:    1 MQDIKTYLSTAPVLATFWFGLLAGLLIEINRFFPDALTFSF 41          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_PSINU (Photosystem I reaction center subunit IX OS=Psilotum nudum GN=psaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.344e-12
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = -3
Query:  138 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 263
            M+D+KTYLS APVL+TLWFG LAGLLIEINR FPDAL  P F
Sbjct:    1 MQDVKTYLSTAPVLATLWFGFLAGLLIEINRFFPDALVSPLF 42          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_HUPLU (Photosystem I reaction center subunit IX OS=Huperzia lucidula GN=psaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.999e-12
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = -3
Query:  144 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFP 263
            M+D++TYLS APVL+TLWFG LAGLLIEINR FPDAL FP
Sbjct:    1 MQDVETYLSTAPVLATLWFGFLAGLLIEINRFFPDALVFP 40          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_ANTFO (Photosystem I reaction center subunit IX OS=Anthoceros formosae GN=psaJ PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.999e-12
Identity = 33/42 (78.57%), Postives = 36/42 (85.71%), Query Frame = -3
Query:  138 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 263
            M+D+KTYLS APVL+TLWFG LAGLLIEINR F DAL  PFF
Sbjct:    1 MQDVKTYLSTAPVLATLWFGFLAGLLIEINRSFSDALVLPFF 42          
The following BLAST results are available for this feature:
BLAST of CB305115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
PSAJ_ANGEV1.468e-1481.82Photosystem I reaction center subunit IX OS=Angiop... [more]
PSAJ_JASNU1.243e-1394.74Photosystem I reaction center subunit IX OS=Jasmin... [more]
PSAJ_CUSOB1.243e-1384.09Photosystem I reaction center subunit IX OS=Cuscut... [more]
PSAJ_MARPO2.769e-1380.95Photosystem I reaction center subunit IX OS=Marcha... [more]
PSAJ_CUSGR2.769e-1381.82Photosystem I reaction center subunit IX OS=Cuscut... [more]
PSAJ_CUSRE3.616e-1383.33Photosystem I reaction center subunit IX OS=Cuscut... [more]
PSAJ_GNEPA1.374e-1280.49Photosystem I reaction center subunit IX OS=Gnetum... [more]
PSAJ_PSINU2.344e-1278.57Photosystem I reaction center subunit IX OS=Psilot... [more]
PSAJ_HUPLU3.999e-1280.00Photosystem I reaction center subunit IX OS=Huperz... [more]
PSAJ_ANTFO3.999e-1278.57Photosystem I reaction center subunit IX OS=Anthoc... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305115 ID=CB305115; Name=CB305115; organism=Citrus sinensis; type=EST; length=331bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAATTGTAAAACAAAAAAAC
GAAAAGAGGGGAAAGAGAGATTAGTCACAAATATTTGATTCTAGCTCTAA
TCTTCTTCACCCCGTTCCAGTTCAATAACTAAAATGAAAAAAAAGGAAAT
GTCAATGCGTCGGGGAATAAACGGTTGATTTCTATCAATAACCCTGCTAA
AGACCCGAACCATAGAGTACTTAGTACCGGGGCCACGGAAAGATATGTTT
TTAGATCTCGCATTGAAAATCCTCCTTCTTTTTTGTTTTTGTATTCCCTA
TTGGAATATATTATGGTAAGAGATGTATACC
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