CB305115

Overview
NameCB305115
Unique NameCB305115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length331
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_CHAVU (Photosystem I reaction center subunit IX OS=Chara vulgaris GN=psaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.222e-12
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = -3
Query:  141 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPF 263
            M+D+KTYLS APVL+TLWFG LAG+LIEINR FPDAL  P+
Sbjct:    1 MQDVKTYLSTAPVLATLWFGLLAGILIEINRFFPDALVLPY 41          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_PHYPA (Photosystem I reaction center subunit IX OS=Physcomitrella patens GN=psaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.820e-12
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = -3
Query:  144 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFP 263
            M+D+KTYLS APVL+TLWFG LAGLLIEINR FPDAL  P
Sbjct:    1 MQDVKTYLSTAPVLATLWFGFLAGLLIEINRFFPDALVLP 40          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_STAPU (Photosystem I reaction center subunit IX OS=Staurastrum punctulatum GN=psaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.984e-11
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = -3
Query:  141 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPF 263
            M+D+KTYLS APVL+ +WFG LAGLLIEINR FPDAL  P+
Sbjct:    1 MQDVKTYLSTAPVLAAIWFGILAGLLIEINRFFPDALVLPY 41          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_CRYJA (Photosystem I reaction center subunit IX OS=Cryptomeria japonica GN=psaJ PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.421e-11
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = -3
Query:  138 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 263
            M+D+KTYLS APVL+ L  G LAGLLIEINR FPDAL FPFF
Sbjct:    1 MQDIKTYLSTAPVLAALSLGFLAGLLIEINRFFPDALIFPFF 42          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_ADICA (Photosystem I reaction center subunit IX OS=Adiantum capillus-veneris GN=psaJ PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.421e-11
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = -3
Query:  141 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPF 263
            M+ +K YLS APV++T+WFG LAGLLIEINR FPDAL FPF
Sbjct:    1 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFFPDALLFPF 41          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_NEPOL (Photosystem I reaction center subunit IX OS=Nephroselmis olivacea GN=psaJ PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.541e-11
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = -3
Query:  141 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPF 263
            M+D  TYLS APVL+ +WFG LAGLLIEINR FPDAL+F F
Sbjct:    1 MKDFTTYLSTAPVLAAVWFGFLAGLLIEINRFFPDALSFSF 41          
BLAST of CB305115 vs. ExPASy Swiss-Prot
Match: PSAJ_CHLAT (Photosystem I reaction center subunit IX OS=Chlorokybus atmophyticus GN=psaJ PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.849e-11
Identity = 31/41 (75.61%), Postives = 32/41 (78.05%), Query Frame = -3
Query:  141 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPF 263
            M+D   YLS APVLS LWF  LAGLLIEINR FPDAL FPF
Sbjct:    1 MQDFTKYLSTAPVLSALWFAILAGLLIEINRFFPDALLFPF 41          
The following BLAST results are available for this feature:
BLAST of CB305115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
PSAJ_CHAVU5.222e-1275.61Photosystem I reaction center subunit IX OS=Chara ... [more]
PSAJ_PHYPA6.820e-1280.00Photosystem I reaction center subunit IX OS=Physco... [more]
PSAJ_STAPU1.984e-1173.17Photosystem I reaction center subunit IX OS=Staura... [more]
PSAJ_CRYJA4.421e-1176.19Photosystem I reaction center subunit IX OS=Crypto... [more]
PSAJ_ADICA4.421e-1173.17Photosystem I reaction center subunit IX OS=Adiant... [more]
PSAJ_NEPOL7.541e-1173.17Photosystem I reaction center subunit IX OS=Nephro... [more]
PSAJ_CHLAT9.849e-1175.61Photosystem I reaction center subunit IX OS=Chloro... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305115 ID=CB305115; Name=CB305115; organism=Citrus sinensis; type=EST; length=331bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAATTGTAAAACAAAAAAAC
GAAAAGAGGGGAAAGAGAGATTAGTCACAAATATTTGATTCTAGCTCTAA
TCTTCTTCACCCCGTTCCAGTTCAATAACTAAAATGAAAAAAAAGGAAAT
GTCAATGCGTCGGGGAATAAACGGTTGATTTCTATCAATAACCCTGCTAA
AGACCCGAACCATAGAGTACTTAGTACCGGGGCCACGGAAAGATATGTTT
TTAGATCTCGCATTGAAAATCCTCCTTCTTTTTTGTTTTTGTATTCCCTA
TTGGAATATATTATGGTAAGAGATGTATACC
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