CB305120

Overview
NameCB305120
Unique NameCB305120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_RALEH (ATP-dependent Clp protease proteolytic subunit OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=clpP PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.222e-22
Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA G KG RSA+P SRI +  P G ARGQA DI  +A E+L +R+ +   LS  TGQP EKI +D  R       +A++YGLID+++
Sbjct:  102 TMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMIHQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVEKIARDTDRDNFMSGDQAVDYGLIDKVL 212          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_CUPTR (ATP-dependent Clp protease proteolytic subunit OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=clpP PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.222e-22
Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA G KG RSA+P SRI +  P G ARGQA DI  +A E+L +R+ +   LS  TGQP EKI +D  R       +A++YGLID+++
Sbjct:  102 TMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMIHQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVEKIARDTDRDNFMSGDQAVDYGLIDKVL 212          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_ACTP7 (ATP-dependent Clp protease proteolytic subunit OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=clpP PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.074e-21
Identity = 49/117 (41.88%), Postives = 75/117 (64.10%), Query Frame = -3
Query:  259 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 609
            TM  +K  V T C G A  +  FLL+GG KG R A+P +R+ +  P G ARGQA DI+ +A E+L++++ + ++++  +GQPFEK+  D  R     + EA+EYGLID+++    IK
Sbjct:   80 TMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARVMIHQPLGGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEAMEYGLIDKVLTHRDIK 196          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_ACTPJ (ATP-dependent Clp protease proteolytic subunit OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=clpP PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.832e-21
Identity = 47/111 (42.34%), Postives = 73/111 (65.77%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TM  +K  V T C G A  +  FLL+GG KG R A+P +R+ +  P G ARGQA DI+ +A E+L++++ + ++++  +GQPFEK+  D  R     + EA+EYGLID+++
Sbjct:   80 TMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARVMIHQPLGGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEAMEYGLIDKVL 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_ACTP2 (ATP-dependent Clp protease proteolytic subunit OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=clpP PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.832e-21
Identity = 47/111 (42.34%), Postives = 73/111 (65.77%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TM  +K  V T C G A  +  FLL+GG KG R A+P +R+ +  P G ARGQA DI+ +A E+L++++ + ++++  +GQPFEK+  D  R     + EA+EYGLID+++
Sbjct:   80 TMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARVMIHQPLGGARGQATDIQIQAQEILKLKEMLTRKMAEHSGQPFEKVAADTERDNFMSAVEAMEYGLIDKVL 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_PSEAK (ATP-dependent Clp protease proteolytic subunit OS=Pseudendoclonium akinetum GN=clpP PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.124e-21
Identity = 49/109 (44.95%), Postives = 76/109 (69.72%), Query Frame = -3
Query:  280 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 606
            M  +KS V T CVG A  +A F+LAGG KG R A+P SRI +  P G ++GQA  + +E++E+LR+RD + +  S +TGQ  E+I++D++R +   ++EA +YGL+D+I
Sbjct:   84 MNYIKSDVTTICVGTAASMASFVLAGGRKGKRLALPHSRIMIHQPEGGSQGQASVVLSESEEVLRIRDEVAQIYSERTGQTLERISRDMNRDQFMSAREAKDYGLVDQI 192          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BACSU (ATP-dependent Clp protease proteolytic subunit OS=Bacillus subtilis GN=clpP PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 3.124e-21
Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA GEKG R A+P S + +  P G A+GQA +I   A  +L +RD + K L+ +TGQP E I +D  R     ++EALEYGLID+I+
Sbjct:   80 TMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSAEEALEYGLIDKIL 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNSC (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain CC9605) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.124e-21
Identity = 57/115 (49.57%), Postives = 73/115 (63.48%), Query Frame = -3
Query:  268 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 609
            T+Q +KS V T CVG A  +  FLLA G KG R A+P SRI +  P  G +R QA DI  EA E+LR+++ + + LS  +GQ FEKI KD  R     ++EA EYGLIDR+I  P
Sbjct:   83 TIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSRRQASDIEIEAREILRMKEMLNRSLSDMSGQSFEKIEKDTDRDYFLSAEEAKEYGLIDRVISHP 197          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_OLTVI (ATP-dependent Clp protease proteolytic subunit OS=Oltmannsiellopsis viridis GN=clpP PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.081e-21
Identity = 46/110 (41.82%), Postives = 77/110 (70.00%), Query Frame = -3
Query:  280 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 609
            TM  +K+ V T CVG A  +A F+LAGG +G R A+P SRI +  P G +RGQA ++ +E++E++R+R  + K  +++TGQP  +I++DL R +   ++EA +YG++D++
Sbjct:   83 TMNYIKADVTTICVGTAASMASFVLAGGTQGKRIALPHSRIMIHQPEGGSRGQASEVLSESEEVMRIRRQVGKIYAQRTGQPLRRISRDLDRDQFLSAREAKDYGIVDQV 192          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_CLOTH (ATP-dependent Clp protease proteolytic subunit OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=clpP PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.081e-21
Identity = 48/111 (43.24%), Postives = 72/111 (64.86%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P S I +  P G ARGQA DI+  A++++++++ + + LS +TGQPFEKI +D  R     ++EA  YG++D ++
Sbjct:   80 TMQYVKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGARGQATDIKIHAEQIIKIKNKLNRILSERTGQPFEKIERDTERDFFMSAEEAKAYGIVDEVM 190          
The following BLAST results are available for this feature:
BLAST of CB305120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_RALEH8.222e-2247.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CUPTR8.222e-2247.75ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACTP71.074e-2141.88ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACTPJ1.832e-2142.34ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACTP21.832e-2142.34ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEAK3.124e-2144.95ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BACSU3.124e-2146.85ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_SYNSC3.124e-2149.57ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP_OLTVI4.081e-2141.82ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOTH4.081e-2143.24ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305120 ID=CB305120; Name=CB305120; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCTCTCAAAACAGGCAAC
CATCAAATTCTTTGTAGGTTTTATTAGATGTAAATTACACATTTCAGAGC
AAACTTCTACAAGAATAATTCGATTGAGTAGTTAATTTTACAAGTAGATG
AATGAAATTACGAAAGATAAAATATTTGATGACTTCAGTCTACTCAGGGG
AGAATCAATGAATACACTAACCAAGACCTGTTCCAGCATCTTTACGAGGC
ATATCTTCCTTAATACGAGGTGGCCTGATTATACGATCTATCAGCCCATA
TTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCCTACTTAAATCCTTCG
TAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGACAACTCCTTGAAAATG
TAATCTCTGACTCTAAGAAGCTCATCTGCTTCATTACGAATGTCATCAGC
CTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAGCAATTCTCGAAAGAG
GCATTGCAGACCGATTACCCTTTTCTCCACCTGCTAGAAGAAACCCTGCT
AAATGATAGGCAAAGCCCACACAGTGAGTGCCAACAGGACTCTTCAAGCT
CTGCATAGTGT
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