CB305120

Overview
NameCB305120
Unique NameCB305120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_STAA1 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = -3
Query:  271 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 609
            T+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   80 TIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_NATTJ (ATP-dependent Clp protease proteolytic subunit OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 48/114 (42.11%), Postives = 71/114 (62.28%), Query Frame = -3
Query:  268 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 609
            TMQ ++S V T CVG A  +   LLA G +G R  +P SRI L  P G A+GQA D+   A E+++ ++ + + L+  TGQP E+I+KD  R     S+EA +YG+ID +++ P
Sbjct:   80 TMQYIRSDVSTICVGMAASMGAVLLAAGNEGKRFCLPNSRIMLHQPMGGAQGQAADVEIHAREIMKTKERLNQILAHHTGQPVEQISKDTDRDFFMSSEEAQKYGVIDDVLKRP 193          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_FRATW (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +   LLAGG KG R ++P S+I +  P G  RGQA DI   A  +LR++D + K L+  TGQ  E I KD  R     + EA  YGLID +I
Sbjct:   83 TMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVI 193          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_FRATT (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. tularensis GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +   LLAGG KG R ++P S+I +  P G  RGQA DI   A  +LR++D + K L+  TGQ  E I KD  R     + EA  YGLID +I
Sbjct:   83 TMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVI 193          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_FRATO (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +   LLAGG KG R ++P S+I +  P G  RGQA DI   A  +LR++D + K L+  TGQ  E I KD  R     + EA  YGLID +I
Sbjct:   83 TMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVI 193          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_FRATN (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. novicida (strain U112) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +   LLAGG KG R ++P S+I +  P G  RGQA DI   A  +LR++D + K L+  TGQ  E I KD  R     + EA  YGLID +I
Sbjct:   83 TMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVI 193          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_FRATM (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +   LLAGG KG R ++P S+I +  P G  RGQA DI   A  +LR++D + K L+  TGQ  E I KD  R     + EA  YGLID +I
Sbjct:   83 TMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVI 193          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_FRATH (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. holarctica (strain LVS) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +   LLAGG KG R ++P S+I +  P G  RGQA DI   A  +LR++D + K L+  TGQ  E I KD  R     + EA  YGLID +I
Sbjct:   83 TMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVI 193          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_FRATF (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +   LLAGG KG R ++P S+I +  P G  RGQA DI   A  +LR++D + K L+  TGQ  E I KD  R     + EA  YGLID +I
Sbjct:   83 TMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVI 193          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_FRAT1 (ATP-dependent Clp protease proteolytic subunit OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +   LLAGG KG R ++P S+I +  P G  RGQA DI   A  +LR++D + K L+  TGQ  E I KD  R     + EA  YGLID +I
Sbjct:   83 TMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVI 193          
The following BLAST results are available for this feature:
BLAST of CB305120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_STAA12.924e-1942.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_NATTJ2.924e-1942.11ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATW2.924e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATT2.924e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATO2.924e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATN2.924e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATM2.924e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATH2.924e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRATF2.924e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRAT12.924e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305120 ID=CB305120; Name=CB305120; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCTCTCAAAACAGGCAAC
CATCAAATTCTTTGTAGGTTTTATTAGATGTAAATTACACATTTCAGAGC
AAACTTCTACAAGAATAATTCGATTGAGTAGTTAATTTTACAAGTAGATG
AATGAAATTACGAAAGATAAAATATTTGATGACTTCAGTCTACTCAGGGG
AGAATCAATGAATACACTAACCAAGACCTGTTCCAGCATCTTTACGAGGC
ATATCTTCCTTAATACGAGGTGGCCTGATTATACGATCTATCAGCCCATA
TTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCCTACTTAAATCCTTCG
TAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGACAACTCCTTGAAAATG
TAATCTCTGACTCTAAGAAGCTCATCTGCTTCATTACGAATGTCATCAGC
CTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAGCAATTCTCGAAAGAG
GCATTGCAGACCGATTACCCTTTTCTCCACCTGCTAGAAGAAACCCTGCT
AAATGATAGGCAAAGCCCACACAGTGAGTGCCAACAGGACTCTTCAAGCT
CTGCATAGTGT
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