CB305120

Overview
NameCB305120
Unique NameCB305120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BURCM (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = -3 
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P SR+ +  P G ARGQA DI  +A E+L +++ +   L++ TGQ  E+I +D  R     S++A  YGLID+++
Sbjct:  103 TMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVL 213
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BURCH (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia cenocepacia (strain HI2424) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = -3 
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P SR+ +  P G ARGQA DI  +A E+L +++ +   L++ TGQ  E+I +D  R     S++A  YGLID+++
Sbjct:  103 TMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVL 213
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BURCA (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia cenocepacia (strain AU 1054) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = -3 
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P SR+ +  P G ARGQA DI  +A E+L +++ +   L++ TGQ  E+I +D  R     S++A  YGLID+++
Sbjct:  103 TMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVL 213
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_ACTSZ (ATP-dependent Clp protease proteolytic subunit OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = -3 
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLAGG  G R+A+P +R+ +  P G  RGQA DI+  A E+L+++  + + L+  +GQP E+I KD  R     ++EA  YGLID ++
Sbjct:   80 TMQFIKPDVRTLCIGQACSMGAFLLAGGAAGKRAALPNARVMIHQPLGGFRGQASDIQIHAQEILKIKHTLNERLAFHSGQPLEQIEKDTDRDNFMSAEEAQNYGLIDSVL 190
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP2_MYXXA (ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus xanthus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 50/116 (43.10%), Postives = 68/116 (58.62%), Query Frame = -3 
Query:  262 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 609
            TMQ +K PV T CVG A  +   LL  G KG R A+P SRI +  P G  RGQA DI  +A E+LR++  + + + + TGQ  E++ KD  R    G+ EA  YG+ID I  P ++
Sbjct:   82 TMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVRGQATDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAYGIIDEIQNPRKV 197
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP1_MYXXD (ATP-dependent Clp protease proteolytic subunit 1 OS=Myxococcus xanthus (strain DK 1622) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 50/116 (43.10%), Postives = 68/116 (58.62%), Query Frame = -3 
Query:  262 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 609
            TMQ +K PV T CVG A  +   LL  G KG R A+P SRI +  P G  RGQA DI  +A E+LR++  + + + + TGQ  E++ KD  R    G+ EA  YG+ID I  P ++
Sbjct:   82 TMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVRGQATDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFMGASEAKAYGIIDEIQNPRKV 197
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_SHEB9 (ATP-dependent Clp protease proteolytic subunit OS=Shewanella baltica (strain OS195) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.819e-19
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = -3 
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLAGGEKG R  +P SR+ +  P G  +GQA DI   A E+L +++ + + L+  TGQP E + +D  R     + +A+EYGL+D ++
Sbjct:   88 TMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRHCLPNSRVMIHQPLGGFQGQASDIAIHAKEILGIKNKLNQMLAEHTGQPLEVVERDTDRDNFMSATQAVEYGLVDSVM 198
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_SHEB8 (ATP-dependent Clp protease proteolytic subunit OS=Shewanella baltica (strain OS185) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.819e-19
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = -3 
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLAGGEKG R  +P SR+ +  P G  +GQA DI   A E+L +++ + + L+  TGQP E + +D  R     + +A+EYGL+D ++
Sbjct:   88 TMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRHCLPNSRVMIHQPLGGFQGQASDIAIHAKEILGIKNKLNQMLAEHTGQPLEVVERDTDRDNFMSATQAVEYGLVDSVM 198
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_SHEB5 (ATP-dependent Clp protease proteolytic subunit OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.819e-19
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = -3 
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLAGGEKG R  +P SR+ +  P G  +GQA DI   A E+L +++ + + L+  TGQP E + +D  R     + +A+EYGL+D ++
Sbjct:   88 TMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRHCLPNSRVMIHQPLGGFQGQASDIAIHAKEILGIKNKLNQMLAEHTGQPLEVVERDTDRDNFMSATQAVEYGLVDSVM 198
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_SHEB2 (ATP-dependent Clp protease proteolytic subunit OS=Shewanella baltica (strain OS223) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.819e-19
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = -3 
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLAGGEKG R  +P SR+ +  P G  +GQA DI   A E+L +++ + + L+  TGQP E + +D  R     + +A+EYGL+D ++
Sbjct:   88 TMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRHCLPNSRVMIHQPLGGFQGQASDIAIHAKEILGIKNKLNQMLAEHTGQPLEVVERDTDRDNFMSATQAVEYGLVDSVM 198
The following BLAST results are available for this feature:
BLAST of CB305120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_BURCM2.924e-1943.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURCH2.924e-1943.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURCA2.924e-1943.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACTSZ2.924e-1942.34ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_MYXXA2.924e-1943.10ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_MYXXD2.924e-1943.10ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_SHEB93.819e-1941.44ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHEB83.819e-1941.44ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHEB53.819e-1941.44ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHEB23.819e-1941.44ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305120 ID=CB305120; Name=CB305120; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCTCTCAAAACAGGCAAC
CATCAAATTCTTTGTAGGTTTTATTAGATGTAAATTACACATTTCAGAGC
AAACTTCTACAAGAATAATTCGATTGAGTAGTTAATTTTACAAGTAGATG
AATGAAATTACGAAAGATAAAATATTTGATGACTTCAGTCTACTCAGGGG
AGAATCAATGAATACACTAACCAAGACCTGTTCCAGCATCTTTACGAGGC
ATATCTTCCTTAATACGAGGTGGCCTGATTATACGATCTATCAGCCCATA
TTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCCTACTTAAATCCTTCG
TAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGACAACTCCTTGAAAATG
TAATCTCTGACTCTAAGAAGCTCATCTGCTTCATTACGAATGTCATCAGC
CTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAGCAATTCTCGAAAGAG
GCATTGCAGACCGATTACCCTTTTCTCCACCTGCTAGAAGAAACCCTGCT
AAATGATAGGCAAAGCCCACACAGTGAGTGCCAACAGGACTCTTCAAGCT
CTGCATAGTGT
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