CB305120

Overview
NameCB305120
Unique NameCB305120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_GEOTN (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus thermodenitrificans (strain NG80-2) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.988e-19
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = -3 
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P S + +  P G A+GQA +I   A  +L +RD + + L+  TGQP E I +D  R     +Q+A EYG+IDR++
Sbjct:   80 TMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLRDKLNRILAENTGQPIEVIERDTDRDNFMTAQKAQEYGIIDRVL 190
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSW (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus sp. (strain WCH70) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.988e-19
Identity = 49/111 (44.14%), Postives = 67/111 (60.36%), Query Frame = -3 
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P S I +  P G A+GQA +I   A  +L +RD + + L+  TGQP E I +D  R     +Q+A EYG+IDR++
Sbjct:   80 TMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEIAAKRILFLRDKLNRILAENTGQPVEVIERDTDRDNFMTAQKAQEYGIIDRVL 190
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BURVG (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.988e-19
Identity = 48/111 (43.24%), Postives = 68/111 (61.26%), Query Frame = -3 
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P SR+ +  P G ARGQA DI  +A E+L +++ +   L++ TGQ  E+I +D  R     S +A  YGLID+++
Sbjct:  103 TMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNNLLAQHTGQDVERIARDTDRDNFMSSDDAKAYGLIDQVL 213
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BURPS (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia pseudomallei GN=clpP PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.988e-19
Identity = 49/110 (44.55%), Postives = 66/110 (60.00%), Query Frame = -3 
Query:  280 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P +R+ +  P G ARGQA DI  +A E+L +RD +   L+  TGQ  E+I +D  R     S++A  YGLID +
Sbjct:  103 TMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 212
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BURP6 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia pseudomallei (strain 668) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.988e-19
Identity = 49/110 (44.55%), Postives = 66/110 (60.00%), Query Frame = -3 
Query:  280 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P +R+ +  P G ARGQA DI  +A E+L +RD +   L+  TGQ  E+I +D  R     S++A  YGLID +
Sbjct:  103 TMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 212
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BURP1 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia pseudomallei (strain 1710b) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.988e-19
Identity = 49/110 (44.55%), Postives = 66/110 (60.00%), Query Frame = -3 
Query:  280 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P +R+ +  P G ARGQA DI  +A E+L +RD +   L+  TGQ  E+I +D  R     S++A  YGLID +
Sbjct:   93 TMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 202
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BURP0 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia pseudomallei (strain 1106a) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.988e-19
Identity = 49/110 (44.55%), Postives = 66/110 (60.00%), Query Frame = -3 
Query:  280 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P +R+ +  P G ARGQA DI  +A E+L +RD +   L+  TGQ  E+I +D  R     S++A  YGLID +
Sbjct:  103 TMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 212
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BURMS (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia mallei (strain SAVP1) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.988e-19
Identity = 49/110 (44.55%), Postives = 66/110 (60.00%), Query Frame = -3 
Query:  280 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P +R+ +  P G ARGQA DI  +A E+L +RD +   L+  TGQ  E+I +D  R     S++A  YGLID +
Sbjct:  103 TMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 212
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BURMA (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia mallei GN=clpP PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.988e-19
Identity = 49/110 (44.55%), Postives = 66/110 (60.00%), Query Frame = -3 
Query:  280 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P +R+ +  P G ARGQA DI  +A E+L +RD +   L+  TGQ  E+I +D  R     S++A  YGLID +
Sbjct:   93 TMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 202
[Close]
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BURM9 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia mallei (strain NCTC 10229) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.988e-19
Identity = 49/110 (44.55%), Postives = 66/110 (60.00%), Query Frame = -3 
Query:  280 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P +R+ +  P G ARGQA DI  +A E+L +RD +   L+  TGQ  E+I +D  R     S++A  YGLID +
Sbjct:  103 TMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMIHQPLGGARGQASDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDTDRDNFMSSEDAKAYGLIDHV 212
The following BLAST results are available for this feature:
BLAST of CB305120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_GEOTN4.988e-1943.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOSW4.988e-1944.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURVG4.988e-1943.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURPS4.988e-1944.55ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURP64.988e-1944.55ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURP14.988e-1944.55ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURP04.988e-1944.55ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURMS4.988e-1944.55ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURMA4.988e-1944.55ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURM94.988e-1944.55ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305120 ID=CB305120; Name=CB305120; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCTCTCAAAACAGGCAAC
CATCAAATTCTTTGTAGGTTTTATTAGATGTAAATTACACATTTCAGAGC
AAACTTCTACAAGAATAATTCGATTGAGTAGTTAATTTTACAAGTAGATG
AATGAAATTACGAAAGATAAAATATTTGATGACTTCAGTCTACTCAGGGG
AGAATCAATGAATACACTAACCAAGACCTGTTCCAGCATCTTTACGAGGC
ATATCTTCCTTAATACGAGGTGGCCTGATTATACGATCTATCAGCCCATA
TTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCCTACTTAAATCCTTCG
TAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGACAACTCCTTGAAAATG
TAATCTCTGACTCTAAGAAGCTCATCTGCTTCATTACGAATGTCATCAGC
CTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAGCAATTCTCGAAAGAG
GCATTGCAGACCGATTACCCTTTTCTCCACCTGCTAGAAGAAACCCTGCT
AAATGATAGGCAAAGCCCACACAGTGAGTGCCAACAGGACTCTTCAAGCT
CTGCATAGTGT
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