CB305120

Overview
NameCB305120
Unique NameCB305120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_GEOBB (ATP-dependent Clp protease proteolytic subunit OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 49/111 (44.14%), Postives = 67/111 (60.36%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TM+ +K+PV T CVG A  +  FLL+GGEKG R ++  SRI +  P G  +GQA DI   A E+LR++D +   L+  TGQ  EK+  D  R      +EA  YG+ID I+
Sbjct:   79 TMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMIHQPLGGFQGQATDIHIHAKEILRMKDQLNALLAEHTGQSVEKVAADTERDYFMSGEEAKNYGIIDAIV 189          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_CLOTE (ATP-dependent Clp protease proteolytic subunit OS=Clostridium tetani GN=clpP PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 48/111 (43.24%), Postives = 65/111 (58.56%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P S I +  P G  +GQA DI   AD +L+++  +   LS KTGQP E I +D  R     + +A +YGLID ++
Sbjct:   80 TMQYIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGIHADRILKIKQNLNSILSEKTGQPLEVIQRDTERDNFMDANQAKDYGLIDEVM 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_ANOFW (ATP-dependent Clp protease proteolytic subunit OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P S I +  P G  +GQA +I   A  +L +RD + + LS  TGQP E I +D  R     +++A EYGLIDR++
Sbjct:   80 TMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGVQGQATEIEIAAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAEKAKEYGLIDRVL 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_ACISJ (ATP-dependent Clp protease proteolytic subunit OS=Acidovorax sp. (strain JS42) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 47/111 (42.34%), Postives = 68/111 (61.26%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C GFA  +  FLLA G KG R ++P S+I +    G ARGQA DI   A ++LR ++ + + L+ +TGQP EK+  D  R     + EA +YG++D++I
Sbjct:   88 TMQFIKPDVSTLCCGFAASMGAFLLAAGAKGKRYSLPNSKIMIHQVLGGARGQATDIEIHARDILRTKEQMNRILAERTGQPIEKVKADTERDYFMTADEAKDYGIVDQVI 198          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNS9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9902) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 49/111 (44.14%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +   V T C G A  +  FLL+GG KG R A+P +RI +  P G A+GQA DI  +A E+L +++ +   L+  TGQP +KI++D  R       EA+EYGLIDR++
Sbjct:   85 TMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLDKISEDTDRDYFLSPAEAVEYGLIDRVV 195          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP2_BURXL (ATP-dependent Clp protease proteolytic subunit 2 OS=Burkholderia xenovorans (strain LB400) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.515e-19
Identity = 47/110 (42.73%), Postives = 66/110 (60.00%), Query Frame = -3
Query:  280 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P SR+ +  P G ARGQA DI  +A E+L +++ +   L+  TGQP E+I +D  R       +A  YGL+D++
Sbjct:  103 TMQFIKPDVSTLCMGLAASMGAFLLAAGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNHLLAHHTGQPVERIARDTDRDNFMSGDDAQAYGLVDQV 212          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_WIGBR (ATP-dependent Clp protease proteolytic subunit OS=Wigglesworthia glossinidia brevipalpis GN=clpP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.508e-19
Identity = 47/111 (42.34%), Postives = 70/111 (63.06%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G +  +A  +LA GEKG R ++P +RI +  P G ++GQA DI     E+L+++  + + LS+ TGQ  E I+KD  R + F   EA+ YGLID++I
Sbjct:   80 TMQFIKCEVSTLCIGQSSSMAALILASGEKGKRFSLPNARIMIHQPLGGSQGQATDIAIHTTEILKIKKCMIELLSKHTGQSAEIISKDTERDRFFSGSEAVIYGLIDKVI 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_SULNB (ATP-dependent Clp protease proteolytic subunit OS=Sulfurovum sp. (strain NBC37-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.508e-19
Identity = 45/111 (40.54%), Postives = 73/111 (65.77%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TM  +K  + T C+G A  +  FLLA G KG R A+P +RI +  P+G A+GQ+ DI+ +A E+ R++D + + ++ KTG+  ++I KD  R     ++EA+EYGLID+++
Sbjct:   80 TMNYIKPDIVTICIGQAASMGAFLLASGTKGKRYALPHARIMIHQPSGGAQGQSTDIQIQAQEIQRLKDTLNEIMAEKTGKTAKRIEKDTERDNFMSAKEAVEYGLIDKVL 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSM (ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp. (strain M21) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.508e-19
Identity = 49/111 (44.14%), Postives = 67/111 (60.36%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TM+ +K+PV T CVG A  +  FLL+GGEKG R ++  SRI +  P G  +GQA DI   A E+LR++D +   L+  TGQ  EK+  D  R      +EA  YG+ID I+
Sbjct:   79 TMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMIHQPLGGFQGQATDIHIHAKEILRMKDELNALLAEHTGQSVEKVAADTERDYFMSGEEAKNYGIIDAIV 189          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_CLOPS (ATP-dependent Clp protease proteolytic subunit OS=Clostridium perfringens (strain SM101 / Type A) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.508e-19
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLL+ G KG R A+P + I +  P G  +GQA DI   A  +L+++D + + LS  T QP EKI  D+ R     + EA+EYGLID++I
Sbjct:   81 TMQYIKPDVSTICIGMAASMGAFLLSSGAKGKRFALPNAEIMIHQPLGGFQGQATDIDIHAKRILKIKDKLNQILSENTNQPLEKIKVDVERDYFMEASEAVEYGLIDKVI 191          
The following BLAST results are available for this feature:
BLAST of CB305120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_GEOBB6.515e-1944.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOTE6.515e-1943.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANOFW6.515e-1944.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACISJ6.515e-1942.34ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNS96.515e-1944.14ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_BURXL6.515e-1942.73ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_WIGBR8.508e-1942.34ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SULNB8.508e-1940.54ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOSM8.508e-1944.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOPS8.508e-1943.24ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305120 ID=CB305120; Name=CB305120; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCTCTCAAAACAGGCAAC
CATCAAATTCTTTGTAGGTTTTATTAGATGTAAATTACACATTTCAGAGC
AAACTTCTACAAGAATAATTCGATTGAGTAGTTAATTTTACAAGTAGATG
AATGAAATTACGAAAGATAAAATATTTGATGACTTCAGTCTACTCAGGGG
AGAATCAATGAATACACTAACCAAGACCTGTTCCAGCATCTTTACGAGGC
ATATCTTCCTTAATACGAGGTGGCCTGATTATACGATCTATCAGCCCATA
TTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCCTACTTAAATCCTTCG
TAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGACAACTCCTTGAAAATG
TAATCTCTGACTCTAAGAAGCTCATCTGCTTCATTACGAATGTCATCAGC
CTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAGCAATTCTCGAAAGAG
GCATTGCAGACCGATTACCCTTTTCTCCACCTGCTAGAAGAAACCCTGCT
AAATGATAGGCAAAGCCCACACAGTGAGTGCCAACAGGACTCTTCAAGCT
CTGCATAGTGT
back to top