CB305120

Overview
NameCB305120
Unique NameCB305120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_CLOPE (ATP-dependent Clp protease proteolytic subunit OS=Clostridium perfringens GN=clpP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.508e-19
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLL+ G KG R A+P + I +  P G  +GQA DI   A  +L+++D + + LS  T QP EKI  D+ R     + EA+EYGLID++I
Sbjct:   81 TMQYIKPDVSTICIGMAASMGAFLLSSGAKGKRFALPNAEIMIHQPLGGFQGQATDIDIHAKRILKIKDKLNQILSENTNQPLEKIKVDVERDYFMEASEAVEYGLIDKVI 191          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_CLOP1 (ATP-dependent Clp protease proteolytic subunit OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.508e-19
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLL+ G KG R A+P + I +  P G  +GQA DI   A  +L+++D + + LS  T QP EKI  D+ R     + EA+EYGLID++I
Sbjct:   81 TMQYIKPDVSTICIGMAASMGAFLLSSGAKGKRFALPNAEIMIHQPLGGFQGQATDIDIHAKRILKIKDKLNQILSENTNQPLEKIKVDVERDYFMEASEAVEYGLIDKVI 191          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP2_BACSK (ATP-dependent Clp protease proteolytic subunit 2 OS=Bacillus clausii (strain KSM-K16) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.508e-19
Identity = 43/114 (37.72%), Postives = 70/114 (61.40%), Query Frame = -3
Query:  268 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 609
            TMQ +K  V T C+G A  +  FLL  G KG R A+P S + +  P G  +GQA D+   A  ++++R+ + + ++ ++GQP+E+I +D  R     +++A EYGLID++I  P
Sbjct:   80 TMQFIKPDVSTICIGMAASMGAFLLTAGAKGKRMALPNSEVMIHQPLGGMQGQAADMEIHARRIIQMREKLNQIMAERSGQPYERIARDTDRDNFMTAEQAKEYGLIDKVIETP 193          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNSC (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) GN=clpP1 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 8.508e-19
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +   V T C G A  +  FLL+GG KG R A+P +RI +  P G A+GQA DI  +A E+L +++ +   ++  TGQP +KI++D  R       EA+EYGLIDR++
Sbjct:   85 TMQQVAPDVVTICYGLAASMGAFLLSGGTKGKRLALPNARIMIHQPLGGAQGQAVDIEIQAKEILYLKETLNGLMAEHTGQPLDKISEDTDRDYFLSPAEAVEYGLIDRVV 195          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_SHESW (ATP-dependent Clp protease proteolytic subunit OS=Shewanella sp. (strain W3-18-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.111e-18
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLAGGEKG R  +P SR+ +  P G  +GQA DI   A E+L ++  +   L+  TGQP E I +D  R     + +A+EYGL+D ++
Sbjct:   88 TMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNLMLAEHTGQPLEVIERDTDRDNFMSATQAVEYGLVDSVM 198          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_SHEPC (ATP-dependent Clp protease proteolytic subunit OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.111e-18
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLAGGEKG R  +P SR+ +  P G  +GQA DI   A E+L ++  +   L+  TGQP E I +D  R     + +A+EYGL+D ++
Sbjct:   88 TMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFCLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNLMLAEHTGQPLEVIERDTDRDNFMSATQAVEYGLVDSVM 198          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_SHELP (ATP-dependent Clp protease proteolytic subunit OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.111e-18
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLAGG KG R  +P SR+ +  P G  +GQA DI   A E+L +++ + + L+  TGQP E I +D  R     + EA EYGL+D ++
Sbjct:   89 TMQFIKPNVSTVCIGQAASMGAFLLAGGAKGKRHCLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKNKLNQMLADHTGQPLEVIERDTDRDNFMSATEAAEYGLVDSVL 199          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_GEOUR (ATP-dependent Clp protease proteolytic subunit OS=Geobacter uraniireducens (strain Rf4) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.111e-18
Identity = 48/111 (43.24%), Postives = 68/111 (61.26%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TM+ +K+PV T CVG A  +  FLL+GGEKG R ++  SRI +  P G  +GQA DI   A E+LR++  + + ++  TGQP EK+  D  R      ++A  YG+ID II
Sbjct:   79 TMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRFSLTNSRIMIHQPLGGFQGQATDIHIHAQEILRMKKKLNELMAEHTGQPVEKLEADTERDYFMSGEDAKNYGIIDSII 189          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_EUBE2 (ATP-dependent Clp protease proteolytic subunit OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.111e-18
Identity = 46/111 (41.44%), Postives = 70/111 (63.06%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLL+GG KG R A+P + I +  P+G ARGQ  +IR  A+ +L+ R+ + + L+  TG+  E+I++D  R     +QEA+ YGLID ++
Sbjct:   80 TMQYIKCDVSTICIGMAASMGAFLLSGGAKGKRLALPNAEIMIHQPSGGARGQETEIRIVAENILKTRNKLNEILAANTGKSVEEISRDTERDNYMTAQEAVAYGLIDSVV 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_CAMHC (ATP-dependent Clp protease proteolytic subunit OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.111e-18
Identity = 48/111 (43.24%), Postives = 68/111 (61.26%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TM  +K  V T C+G A  +  FLL+ GEKG R A+P +RI +  P G A+GQA DI     E+LR++  + K L+  +GQ   KI KD  R     +QEA++YGLID+++
Sbjct:   79 TMNYIKPAVSTICIGQAASMGAFLLSCGEKGKRYALPNARIMIHQPLGGAQGQATDIEITTKEILRIKATLNKILAENSGQKLSKIEKDTDRDFYMSAQEAVKYGLIDKVL 189          
The following BLAST results are available for this feature:
BLAST of CB305120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_CLOPE8.508e-1943.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOP18.508e-1943.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_BACSK8.508e-1937.72ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_SYNSC8.508e-1943.24ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_SHESW1.111e-1842.34ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHEPC1.111e-1842.34ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHELP1.111e-1842.34ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOUR1.111e-1843.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_EUBE21.111e-1841.44ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CAMHC1.111e-1843.24ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305120 ID=CB305120; Name=CB305120; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCTCTCAAAACAGGCAAC
CATCAAATTCTTTGTAGGTTTTATTAGATGTAAATTACACATTTCAGAGC
AAACTTCTACAAGAATAATTCGATTGAGTAGTTAATTTTACAAGTAGATG
AATGAAATTACGAAAGATAAAATATTTGATGACTTCAGTCTACTCAGGGG
AGAATCAATGAATACACTAACCAAGACCTGTTCCAGCATCTTTACGAGGC
ATATCTTCCTTAATACGAGGTGGCCTGATTATACGATCTATCAGCCCATA
TTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCCTACTTAAATCCTTCG
TAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGACAACTCCTTGAAAATG
TAATCTCTGACTCTAAGAAGCTCATCTGCTTCATTACGAATGTCATCAGC
CTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAGCAATTCTCGAAAGAG
GCATTGCAGACCGATTACCCTTTTCTCCACCTGCTAGAAGAAACCCTGCT
AAATGATAGGCAAAGCCCACACAGTGAGTGCCAACAGGACTCTTCAAGCT
CTGCATAGTGT
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