CB305120

Overview
NameCB305120
Unique NameCB305120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:487..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP1_PROMP (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.081e-21
Identity = 54/117 (46.15%), Postives = 72/117 (61.54%), Query Frame = -3
Query:  259 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 609
            TMQ +K  + T CVG A  +  FLLA G KG RS++  SRI +  P G ARGQA DIR +ADE+L +++ +  ELS +TG+  E I  D  R      QEA+EYGLID ++    +K
Sbjct:   78 TMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMIHQPLGGARGQASDIRIQADEILYLKERLNTELSERTGKELETIKGDTDRDFYMSPQEAVEYGLIDLVLDKKPVK 194          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP1_PROM9 (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain MIT 9312) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.081e-21
Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = -3
Query:  259 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 609
            TMQ +K  + T CVG A  +  FLLA G KG RS++  SRI +  P G ARGQA DIR +ADE+L +++ +  ELS +TG+ +E I +D  R       EA+EYGLID ++    +K
Sbjct:   78 TMQHVKPDIHTVCVGLAASMGAFLLAAGTKGKRSSLRHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGKDYETIKEDTDRDFYMSPSEAVEYGLIDLVLDKKPVK 194          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_VARPS (ATP-dependent Clp protease proteolytic subunit OS=Variovorax paradoxus (strain S110) GN=clpP PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.329e-21
Identity = 50/111 (45.05%), Postives = 70/111 (63.06%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+GFA  +  FLLA GEKG R ++P S+I +    G ARGQA DI   A ++LR +D + + L+ +TGQP EK+  D  R     + EA +YGL+D++I
Sbjct:   88 TMQFIKPDVSTMCIGFAASMGAFLLAAGEKGKRFSLPNSKIMIHQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQPLEKVKSDTERDYFLTADEAKDYGLVDQVI 198          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_CHLCH (ATP-dependent Clp protease proteolytic subunit OS=Chlorobium chlorochromatii (strain CaD3) GN=clpP PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.329e-21
Identity = 54/121 (44.63%), Postives = 76/121 (62.81%), Query Frame = -3
Query:  253 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII--RPPRIKED 609
            TMQ ++  + T CVG A  +  FLLA G KG R+++P SRI +  P+G A+GQ  DI  +A E+ ++R  + + L++ TGQP EK+ +D  R +    QEALEYGLID I   RP   K+D
Sbjct:  105 TMQYIRPEISTVCVGMAASMGAFLLASGNKGKRASLPHSRIMIHQPSGGAQGQETDIVIQAREIEKIRRLLEELLAKHTGQPVEKVREDSERDRWMNPQEALEYGLIDAIFEKRPTPEKKD 225          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BACA2 (ATP-dependent Clp protease proteolytic subunit OS=Bacillus amyloliquefaciens (strain FZB42) GN=clpP PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.960e-21
Identity = 51/111 (45.95%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA GEKG R A+P S + +  P G A+GQA +I   A  +L +RD + K L+ +TGQP E I +D  R     + EALEYGLID+++
Sbjct:   80 TMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQPLEVIERDTDRDNFKSADEALEYGLIDKVL 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNE7 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.960e-21
Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +KSPV T C+G A  +  FLL  G KG R A+P SRI +  P  G  R QA DI  EA E+LR++  + + ++ +TGQP EKI KD  R     ++EA EYGLID++I
Sbjct:   83 TMQYIKSPVITICLGLAASMGAFLLCAGSKGKRLALPHSRIMIHQPLGGTGRRQASDIEIEAKEILRIKKLLNQIMADRTGQPLEKIEKDTDRDYFMSAEEAREYGLIDQVI 194          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNP6 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.960e-21
Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +KSPV T C+G A  +  FLL  G KG R A+P SRI +  P  G  R QA DI  EA E+LR++  + + ++ +TGQP EKI KD  R     ++EA EYGLID++I
Sbjct:   83 TMQYIKSPVITICLGLAASMGAFLLCAGSKGKRLALPHSRIMIHQPLGGTGRRQASDIEIEAKEILRIKKLLNQIMADRTGQPLEKIEKDTDRDYFMSAEEAREYGLIDQVI 194          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNS9 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9902) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.960e-21
Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T CVG A  +  FLL  G KG RS++  SRI +  P G A GQA DIR +ADE+L ++D +  ELS +TGQP ++I +D  R       EA+ YGLID +I
Sbjct:   78 TMQHIKPDVQTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMIHQPLGGASGQASDIRIQADEILYLKDRLNTELSDRTGQPLDRIQEDTDRDFFMSPGEAVSYGLIDSVI 188          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_THET8 (ATP-dependent Clp protease proteolytic subunit OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpP PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.090e-21
Identity = 48/111 (43.24%), Postives = 72/111 (64.86%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +++PV T  +G A  +A  +LA GEKG R A+P +++ +  P G  RG A DI  +A E+L+ +  + + L++ TGQP EK+ KD  R     +QEALEYGLID+++
Sbjct:   79 TMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMIHQPWGGVRGTASDIAIQAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEALEYGLIDQVV 189          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_THET2 (ATP-dependent Clp protease proteolytic subunit OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpP PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 9.090e-21
Identity = 48/111 (43.24%), Postives = 72/111 (64.86%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +++PV T  +G A  +A  +LA GEKG R A+P +++ +  P G  RG A DI  +A E+L+ +  + + L++ TGQP EK+ KD  R     +QEALEYGLID+++
Sbjct:   79 TMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMIHQPWGGVRGTASDIAIQAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEALEYGLIDQVV 189          
The following BLAST results are available for this feature:
BLAST of CB305120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP1_PROMP4.081e-2146.15ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_PROM94.081e-2145.30ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_VARPS5.329e-2145.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHLCH5.329e-2144.63ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BACA26.960e-2145.95ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_SYNE76.960e-2148.21ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_SYNP66.960e-2148.21ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_SYNS96.960e-2147.75ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_THET89.090e-2143.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THET29.090e-2143.24ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305120 ID=CB305120; Name=CB305120; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCTCTCAAAACAGGCAAC
CATCAAATTCTTTGTAGGTTTTATTAGATGTAAATTACACATTTCAGAGC
AAACTTCTACAAGAATAATTCGATTGAGTAGTTAATTTTACAAGTAGATG
AATGAAATTACGAAAGATAAAATATTTGATGACTTCAGTCTACTCAGGGG
AGAATCAATGAATACACTAACCAAGACCTGTTCCAGCATCTTTACGAGGC
ATATCTTCCTTAATACGAGGTGGCCTGATTATACGATCTATCAGCCCATA
TTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCCTACTTAAATCCTTCG
TAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGACAACTCCTTGAAAATG
TAATCTCTGACTCTAAGAAGCTCATCTGCTTCATTACGAATGTCATCAGC
CTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAGCAATTCTCGAAAGAG
GCATTGCAGACCGATTACCCTTTTCTCCACCTGCTAGAAGAAACCCTGCT
AAATGATAGGCAAAGCCCACACAGTGAGTGCCAACAGGACTCTTCAAGCT
CTGCATAGTGT
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