CB305120

Overview
NameCB305120
Unique NameCB305120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:487..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNS9 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain CC9902) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.090e-21
Identity = 56/115 (48.70%), Postives = 72/115 (62.61%), Query Frame = -3
Query:  268 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 609
            T+Q +KS V T CVG A  +  FLLA G KG R A+P SRI +  P  G +R QA DI  EA E+LR++D +   L+  +GQ FEKI KD  R     ++EA+ YGLIDR+I  P
Sbjct:   83 TIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSRRQASDIEIEAREILRMKDMLNHSLADMSGQTFEKIEKDTDRDYFLSAEEAMAYGLIDRVISHP 197          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMA (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.090e-21
Identity = 53/115 (46.09%), Postives = 73/115 (63.48%), Query Frame = -3
Query:  268 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 609
            TM+ +KS V T CVG A  +  FLL+ G K  R A+P SRI +  P  G ++ QA DI  EA E+LR++D + + ++  TGQPFEKI KD  R     ++EA +YGLID++I  P
Sbjct:   83 TMKYVKSDVVTICVGLAASMGAFLLSAGTKNKRLALPHSRIMIHQPLGGTSQRQASDIEIEAKEILRIKDMLNRSMAEMTGQPFEKIEKDTDRDYFLSAKEAKDYGLIDKVISHP 197          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP1_PROMA (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus GN=clpP1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.090e-21
Identity = 51/111 (45.95%), Postives = 68/111 (61.26%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            T+Q +K  V T CVG A  +  FLL  G KG RS++  SRI +  P G ARGQA DIR +ADE+L ++  +  ELS +TGQP  KI +D  R       EA+ YG+ID ++
Sbjct:   78 TIQHIKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQATDIRIQADEILFLKQKLNTELSNRTGQPLSKIAEDTDRDFYMSPSEAISYGIIDNVL 188          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_RALSO (ATP-dependent Clp protease proteolytic subunit OS=Ralstonia solanacearum GN=clpP PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.187e-20
Identity = 52/111 (46.85%), Postives = 68/111 (61.26%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P SRI +  P G ARGQA DI  +A E+L +R+ +   LS  TGQP +KI +D  R       +A EYGLID+++
Sbjct:  102 TMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRYALPNSRIMIHQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVDKIARDTDRDNFMSGDQAKEYGLIDKVL 212          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_METPP (ATP-dependent Clp protease proteolytic subunit OS=Methylibium petroleiphilum (strain PM1) GN=clpP PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.187e-20
Identity = 51/111 (45.95%), Postives = 71/111 (63.96%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P SR+ +  P+G A+GQA DI  +A E+L++R+ +   L+ +TGQP EKI  D  R     ++EA  YGLID++I
Sbjct:   88 TMQFIKPDVSTLCMGIAASMGAFLLAAGAKGKRFALPNSRVMIHQPSGGAQGQATDIEIQAREILKLRESLNGILAERTGQPLEKIRADSERDYFMSAEEATGYGLIDKVI 198          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_THETN (ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter tengcongensis GN=clpP PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T CVG A  +A FLLA G KG R A+P S I +  P G  +GQA DI+  A+ LLR+RD + + LS  TGQP EKI  D+ R     ++EA  YG+ID I+
Sbjct:   80 TMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPWGGMQGQATDIKIHAERLLRLRDKLERILSENTGQPLEKIKADMERDYFMTAEEAKTYGIIDDIL 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_THESQ (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp. (strain RQ2) GN=clpP PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 51/111 (45.95%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T CVG A  +A  LLA G KG R A+P +RI +  P G A G A D+     ELLR++D + + LS+ TGQP EKI KD  R     ++EA EYG++D+++
Sbjct:   89 TMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_THEP1 (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=clpP PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 51/111 (45.95%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T CVG A  +A  LLA G KG R A+P +RI +  P G A G A D+     ELLR++D + + LS+ TGQP EKI KD  R     ++EA EYG++D+++
Sbjct:   89 TMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_THEMA (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 51/111 (45.95%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T CVG A  +A  LLA G KG R A+P +RI +  P G A G A D+     ELLR++D + + LS+ TGQP EKI KD  R     ++EA EYG++D+++
Sbjct:   89 TMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_DESDG (ATP-dependent Clp protease proteolytic subunit OS=Desulfovibrio desulfuricans (strain G20) GN=clpP PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 52/111 (46.85%), Postives = 71/111 (63.96%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ + +PV T C+G A  +  FLLA G+ G R A+P SRI +  P G A+GQA DI  +A E+LR++D + + LSR TGQP EKI +   R    G + A  +G+IDRI+
Sbjct:   79 TMQYISAPVATLCMGQAASMGAFLLAAGQPGMRFALPNSRIMIHQPMGGAQGQATDIDIQAREILRLKDRLNEILSRHTGQPLEKIVEHTDRDYFMGPENAKNFGIIDRIL 189          
The following BLAST results are available for this feature:
BLAST of CB305120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP3_SYNS99.090e-2148.70ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_PROMA9.090e-2146.09ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_PROMA9.090e-2145.95ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_RALSO1.187e-2046.85ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_METPP1.187e-2045.95ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THETN1.551e-2048.65ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THESQ1.551e-2045.95ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP11.551e-2045.95ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEMA1.551e-2045.95ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESDG1.551e-2046.85ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305120 ID=CB305120; Name=CB305120; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCTCTCAAAACAGGCAAC
CATCAAATTCTTTGTAGGTTTTATTAGATGTAAATTACACATTTCAGAGC
AAACTTCTACAAGAATAATTCGATTGAGTAGTTAATTTTACAAGTAGATG
AATGAAATTACGAAAGATAAAATATTTGATGACTTCAGTCTACTCAGGGG
AGAATCAATGAATACACTAACCAAGACCTGTTCCAGCATCTTTACGAGGC
ATATCTTCCTTAATACGAGGTGGCCTGATTATACGATCTATCAGCCCATA
TTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCCTACTTAAATCCTTCG
TAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGACAACTCCTTGAAAATG
TAATCTCTGACTCTAAGAAGCTCATCTGCTTCATTACGAATGTCATCAGC
CTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAGCAATTCTCGAAAGAG
GCATTGCAGACCGATTACCCTTTTCTCCACCTGCTAGAAGAAACCCTGCT
AAATGATAGGCAAAGCCCACACAGTGAGTGCCAACAGGACTCTTCAAGCT
CTGCATAGTGT
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