CB305120

Overview
NameCB305120
Unique NameCB305120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:487..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_CLOK5 (ATP-dependent Clp protease proteolytic subunit OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=clpP PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 51/110 (46.36%), Postives = 67/110 (60.91%), Query Frame = -3
Query:  280 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 609
            TMQ +KS V T C+G A  +  FLLA GEKG R A+P S I +  P G  +GQA DI   AD +LR++  +   +S +TGQ  EK+ KD  R     ++EA EYGLID +
Sbjct:   80 TMQYIKSDVSTICIGMAASMGAFLLAAGEKGKRFALPNSEIMIHQPLGGFQGQATDIGIHADRILRIKKKLNAIISERTGQSIEKVEKDTERDNFMTAEEAKEYGLIDEV 189          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_CLOK1 (ATP-dependent Clp protease proteolytic subunit OS=Clostridium kluyveri (strain NBRC 12016) GN=clpP PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 51/110 (46.36%), Postives = 67/110 (60.91%), Query Frame = -3
Query:  280 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 609
            TMQ +KS V T C+G A  +  FLLA GEKG R A+P S I +  P G  +GQA DI   AD +LR++  +   +S +TGQ  EK+ KD  R     ++EA EYGLID +
Sbjct:   80 TMQYIKSDVSTICIGMAASMGAFLLAAGEKGKRFALPNSEIMIHQPLGGFQGQATDIGIHADRILRIKKKLNAIISERTGQSIEKVEKDTERDNFMTAEEAKEYGLIDEV 189          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_ALKMQ (ATP-dependent Clp protease proteolytic subunit OS=Alkaliphilus metalliredigens (strain QYMF) GN=clpP PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 49/111 (44.14%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TM  +K  V T CVG A  +  FLLA G KG R A+P + + +  P G  RGQA+DIR  A+ ++++RD + K L  +TGQP E++ KD  R     ++EA EYG+ID +I
Sbjct:   80 TMNYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNAEVMIHQPLGGTRGQAEDIRIHAERIVKLRDTLNKILVERTGQPLERVQKDTDRDFFMEAKEAKEYGIIDEVI 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNPX (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain WH8102) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 55/115 (47.83%), Postives = 73/115 (63.48%), Query Frame = -3
Query:  268 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 609
            T+Q +KS V T CVG A  +  FLLA G KG R A+P SRI +  P  G +R QA DI  EA E+LR+++ + + LS  +GQ F+KI KD  R     ++EA +YGLIDR+I  P
Sbjct:   83 TIQYVKSEVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSRRQASDIEIEAREILRMKEMLNRSLSDMSGQSFDKIEKDTDRDYFLSAEEAKDYGLIDRVISHP 197          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNSC (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9605) GN=clpP2 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.551e-20
Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T CVG A  +  FLL  G KG RS++  SRI +  P G A+GQA DIR +ADE+L +++ + KELS +TGQ  ++I +D  R       EA+ YGLID +I
Sbjct:   78 TMQHIKPDVHTVCVGLAASMGAFLLCAGTKGKRSSLQHSRIMIHQPLGGAQGQASDIRIQADEILFLKERLNKELSDRTGQTLDRIQQDTDRDFFMSPTEAMNYGLIDSVI 188          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_THELT (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=clpP PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.025e-20
Identity = 54/115 (46.96%), Postives = 69/115 (60.00%), Query Frame = -3
Query:  265 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 609
            TMQ +KS V T CVG A  +A  LLA G KG R A+P +RI L  P G A G   D+     ELLR+++ I   LS KTGQP ++I KD  R     + EAL+YGL+D++I   R
Sbjct:   84 TMQYIKSDVVTICVGQAASMAAVLLASGTKGKRFALPNARIMLHQPLGGAEGPVKDVEIITKELLRIKNLINTILSEKTGQPLDRIEKDTDRDFFMSAYEALDYGLVDKVIESKR 198          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP1_GLOVI (ATP-dependent Clp protease proteolytic subunit 1 OS=Gloeobacter violaceus GN=clpP1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.025e-20
Identity = 48/112 (42.86%), Postives = 73/112 (65.18%), Query Frame = -3
Query:  274 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 609
            TMQ +++ V T CVG A  +  FLL  G KG R+++P SRI +  P G A+GQA DI  +A E+L  +D + + LS +TGQP E+I +D  R     +++A +YGLID++++
Sbjct:   82 TMQHVRADVATMCVGLAASMGSFLLTAGAKGKRTSLPHSRIMIHQPLGGAQGQATDIGIQAKEILYTKDRLNQILSERTGQPLERIERDTDRDFFMSAEDAKQYGLIDQVVQ 193          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_SYNWW (ATP-dependent Clp protease proteolytic subunit OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=clpP PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = -3
Query:  265 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 609
            T+Q ++  V T CVG A  +  FLLA G+KG R A+P + I +  PAG  +GQA DI   A  ++ +++ + K L+ +TGQP E+I KD  R     +QEA EYG+ID +I  P+
Sbjct:   81 TLQYIRPDVSTICVGLAASMGAFLLAAGKKGKRYALPNAEIMIHQPAGGTQGQATDIEIHARRIMNMKESLNKILAERTGQPLERIQKDTDRDYFMTAQEAKEYGIIDEVISHPK 195          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_PSYCK (ATP-dependent Clp protease proteolytic subunit OS=Psychrobacter cryohalolentis (strain K5) GN=clpP PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TM  +K  V T C+G AY +  FLLA GEKG R A+  +R+ +  P+G A+GQA DI   A E+L+ R  + + L+ +TGQP +KI KD+ R     ++EA EYGLID ++
Sbjct:   98 TMNFIKPEVSTICMGGAYSMGSFLLAAGEKGKRYALANARVMIHQPSGGAQGQATDIEINAREILKTRARLNEILAERTGQPVDKIEKDVERDYWLDAKEAKEYGLIDEVL 208          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BACP2 (ATP-dependent Clp protease proteolytic subunit OS=Bacillus pumilus (strain SAFR-032) GN=clpP PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.454e-20
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA GEKG R A+P S + +  P G A+GQA +I   A  +L +RD + + L+ +TGQP E I +D  R     ++EAL+YGLID+++
Sbjct:   80 TMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQPIEVIERDTDRDNFKTAEEALQYGLIDKVL 190          
The following BLAST results are available for this feature:
BLAST of CB305120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_CLOK51.551e-2046.36ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOK11.551e-2046.36ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ALKMQ1.551e-2044.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_SYNPX1.551e-2047.83ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_SYNSC1.551e-2046.85ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_THELT2.025e-2046.96ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_GLOVI2.025e-2042.86ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_SYNWW2.645e-2042.61ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSYCK2.645e-2045.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BACP23.454e-2044.14ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305120 ID=CB305120; Name=CB305120; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCTCTCAAAACAGGCAAC
CATCAAATTCTTTGTAGGTTTTATTAGATGTAAATTACACATTTCAGAGC
AAACTTCTACAAGAATAATTCGATTGAGTAGTTAATTTTACAAGTAGATG
AATGAAATTACGAAAGATAAAATATTTGATGACTTCAGTCTACTCAGGGG
AGAATCAATGAATACACTAACCAAGACCTGTTCCAGCATCTTTACGAGGC
ATATCTTCCTTAATACGAGGTGGCCTGATTATACGATCTATCAGCCCATA
TTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCCTACTTAAATCCTTCG
TAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGACAACTCCTTGAAAATG
TAATCTCTGACTCTAAGAAGCTCATCTGCTTCATTACGAATGTCATCAGC
CTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAGCAATTCTCGAAAGAG
GCATTGCAGACCGATTACCCTTTTCTCCACCTGCTAGAAGAAACCCTGCT
AAATGATAGGCAAAGCCCACACAGTGAGTGCCAACAGGACTCTTCAAGCT
CTGCATAGTGT
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