CB305120

Overview
NameCB305120
Unique NameCB305120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:487..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BARBK (ATP-dependent Clp protease proteolytic subunit OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=clpP PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.454e-15
Identity = 40/112 (35.71%), Postives = 67/112 (59.82%), Query Frame = -3
Query:  274 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 609
            TMQ ++ P+ T C+G A  +   LL  G KG+R ++P +RI +  P+G  +GQA DI   A +++R++ ++ +   + TGQ +E I   L R     ++EA  +GLID +I+
Sbjct:   88 TMQFIRPPISTLCMGQAASMGSLLLTAGAKGHRFSLPNARIMVHQPSGGFQGQASDIERHAQDIIRMKRHLNEIYVQHTGQDYEIIENTLDRDHFMTAEEAKMFGLIDDVIQ 199          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP2_CORGL (ATP-dependent Clp protease proteolytic subunit 2 OS=Corynebacterium glutamicum GN=clpP2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.454e-15
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TM+     + T+ +G A  +  FLL+GG KG R A+P +RI +  P+    G A DI  +A++    +  + + ++  TGQ FE+I+KD  R + F +QEA +YGL+D +I
Sbjct:   82 TMKYSPCDIATYGMGLAASMGQFLLSGGTKGKRFALPHARIMMHQPSAGVGGTAADIAIQAEQFAATKREMAQLIAEHTGQTFEQISKDSDRDRWFTAQEAKDYGLVDHVI 192          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP2_COREF (ATP-dependent Clp protease proteolytic subunit 2 OS=Corynebacterium efficiens GN=clpP2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.454e-15
Identity = 40/111 (36.04%), Postives = 66/111 (59.46%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TM+     + T+ +G A  +  FLL+GG  G R A+P +RI +  P+    G A DI  +A++  + +  + K ++  TGQ FE++TKD  R + F +++A EYGL+D +I
Sbjct:   80 TMKYSPCDIATYGMGLAASMGQFLLSGGTPGKRYALPHARIMMHQPSAGVGGTAADIAIQAEQFAQTKREMAKLIAEHTGQTFEQVTKDSDRDRWFTAEQAKEYGLVDHVI 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP1_FRASC (ATP-dependent Clp protease proteolytic subunit 1 OS=Frankia sp. (strain CcI3) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.454e-15
Identity = 39/115 (33.91%), Postives = 68/115 (59.13%), Query Frame = -3
Query:  265 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 609
            TMQ +++ V T  +G A  +  FLL  G  G R ++P +RI +  P+G   G A DI  +A+++L  +  + + ++  TGQP E+I +D  R + F ++EA +YG +D +++  R
Sbjct:   90 TMQFVENDVATVSLGLAASMGQFLLCAGASGKRYSLPHARIMMHQPSGGIGGTASDIAIQAEQMLYTKRMMQERIAFHTGQPIEQIERDSDRDRWFTAEEAKDYGFVDHVVQQAR 204          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_LEGPH (ATP-dependent Clp protease proteolytic subunit OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=clpP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.735e-15
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A   A  LL  G +G R  +P SR+ +  P G  RGQA DI   A E L VR+ +   +++ T +  ++I +D  R     + +A+EYGLID+++
Sbjct:   92 TMQFIKPDVSTLCIGQAASAAALLLCAGAEGKRFCLPNSRVMIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQAMEYGLIDKVL 202          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_LEGPC (ATP-dependent Clp protease proteolytic subunit OS=Legionella pneumophila (strain Corby) GN=clpP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.735e-15
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A   A  LL  G +G R  +P SR+ +  P G  RGQA DI   A E L VR+ +   +++ T +  ++I +D  R     + +A+EYGLID+++
Sbjct:   92 TMQFIKPDVSTLCIGQAASAAALLLCAGAEGKRFCLPNSRVMIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQAMEYGLIDKVL 202          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_LEGPA (ATP-dependent Clp protease proteolytic subunit OS=Legionella pneumophila (strain Paris) GN=clpP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.735e-15
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A   A  LL  G +G R  +P SR+ +  P G  RGQA DI   A E L VR+ +   +++ T +  ++I +D  R     + +A+EYGLID+++
Sbjct:   92 TMQFIKPDVSTLCIGQAASAAALLLCAGAEGKRFCLPNSRVMIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQAMEYGLIDKVL 202          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_COXBN (ATP-dependent Clp protease proteolytic subunit OS=Coxiella burnetii (strain Dugway 5J108-111) GN=clpP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.735e-15
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = -3
Query:  280 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 609
            TMQ +K  V T C+G A      LLAGG KG R  +P S + +    G  +GQ  DI+  A +  RV D + + L++ TG+  E++ KD +R      +EA+EYGLID I
Sbjct:   81 TMQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVMIHQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVEYGLIDSI 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_COXB2 (ATP-dependent Clp protease proteolytic subunit OS=Coxiella burnetii (strain CbuG_Q212) GN=clpP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.735e-15
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = -3
Query:  280 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 609
            TMQ +K  V T C+G A      LLAGG KG R  +P S + +    G  +GQ  DI+  A +  RV D + + L++ TG+  E++ KD +R      +EA+EYGLID I
Sbjct:   81 TMQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVMIHQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVEYGLIDSI 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_COXB1 (ATP-dependent Clp protease proteolytic subunit OS=Coxiella burnetii (strain CbuK_Q154) GN=clpP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.735e-15
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = -3
Query:  280 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 609
            TMQ +K  V T C+G A      LLAGG KG R  +P S + +    G  +GQ  DI+  A +  RV D + + L++ TG+  E++ KD +R      +EA+EYGLID I
Sbjct:   81 TMQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVMIHQVLGGYQGQGTDIQIHAKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFLTPEEAVEYGLIDSI 190          
The following BLAST results are available for this feature:
BLAST of CB305120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_BARBK7.454e-1535.71ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_CORGL7.454e-1536.94ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_COREF7.454e-1536.04ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_FRASC7.454e-1533.91ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_LEGPH9.735e-1537.84ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEGPC9.735e-1537.84ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEGPA9.735e-1537.84ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_COXBN9.735e-1540.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_COXB29.735e-1540.00ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_COXB19.735e-1540.00ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305120 ID=CB305120; Name=CB305120; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCTCTCAAAACAGGCAAC
CATCAAATTCTTTGTAGGTTTTATTAGATGTAAATTACACATTTCAGAGC
AAACTTCTACAAGAATAATTCGATTGAGTAGTTAATTTTACAAGTAGATG
AATGAAATTACGAAAGATAAAATATTTGATGACTTCAGTCTACTCAGGGG
AGAATCAATGAATACACTAACCAAGACCTGTTCCAGCATCTTTACGAGGC
ATATCTTCCTTAATACGAGGTGGCCTGATTATACGATCTATCAGCCCATA
TTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCCTACTTAAATCCTTCG
TAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGACAACTCCTTGAAAATG
TAATCTCTGACTCTAAGAAGCTCATCTGCTTCATTACGAATGTCATCAGC
CTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAGCAATTCTCGAAAGAG
GCATTGCAGACCGATTACCCTTTTCTCCACCTGCTAGAAGAAACCCTGCT
AAATGATAGGCAAAGCCCACACAGTGAGTGCCAACAGGACTCTTCAAGCT
CTGCATAGTGT
back to top