CB305120

Overview
NameCB305120
Unique NameCB305120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:487..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_ACIAC (ATP-dependent Clp protease proteolytic subunit OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.454e-20
Identity = 49/111 (44.14%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+GFA  +  FLLA G KG R ++P S+I +    G ARGQA DI   A ++LR +D + + L+ +TGQP EK+  D  R     + EA EYGL+D+++
Sbjct:   88 TMQFIKPDVSTMCLGFAASMGAFLLAAGAKGKRFSLPNSKIMIHQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQPLEKVKADTERDYFLTADEAKEYGLVDQVV 198          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNY3 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.454e-20
Identity = 51/118 (43.22%), Postives = 72/118 (61.02%), Query Frame = -3
Query:  256 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKE 609
            TMQ ++  V T C G A  +  FLL+GG KG R A+P SRI +  P G A+GQA +I  +A E+L ++D +   L   TGQP EK+ +D  R     ++EA EYGLID++I  P + +
Sbjct:  100 TMQQIRPDVVTICFGLAASMGAFLLSGGCKGKRMALPSSRIMIHQPLGGAQGQAVEIEIQAREILYIKDRLNTMLVEHTGQPMEKLQEDTERDFFMSAEEAKEYGLIDQVISRPNLPD 217          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMT (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus (strain NATL2A) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.454e-20
Identity = 53/115 (46.09%), Postives = 72/115 (62.61%), Query Frame = -3
Query:  268 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 609
            TM+ +KS + T CVG A  +  FLL+ G KG R A+P SRI +  P  G A+ QA DI  EA E+LR+++ + K ++  TGQ +EKI KD  R     ++EA  YGLIDR+I  P
Sbjct:   83 TMKYVKSDLVTICVGLAASMGAFLLSAGTKGKRLALPHSRIMIHQPLGGTAQRQASDIEIEAREILRIKEMLNKSMAEMTGQTYEKIEKDTDRDYFLSAEEAKNYGLIDRVITHP 197          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP1_METCA (ATP-dependent Clp protease proteolytic subunit 1 OS=Methylococcus capsulatus GN=clpP1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.454e-20
Identity = 53/111 (47.75%), Postives = 66/111 (59.46%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T CVG A  +   LLAGG  G R  +P SRI +  P G  +GQA DI   A E+L VRD + K L+  TGQP EKI  D  R    G  +A+EYGLID+++
Sbjct:   88 TMQFIKPDVSTLCVGQAASMGALLLAGGAAGKRYCLPHSRIMIHQPLGGFQGQASDIDIHAREILAVRDRLNKILAHHTGQPIEKIQIDTDRDNFMGGNDAVEYGLIDKVL 198          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_CARHZ (ATP-dependent Clp protease proteolytic subunit OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.512e-20
Identity = 51/111 (45.95%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA G KG R ++P +RI +  P G  +GQA DI   A E+LR+RD + + L++ TGQP EKI +D  R     + EA EYG+ID +I
Sbjct:   81 TMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQATDIDIHAREILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAEAKEYGIIDEVI 191          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BORPE (ATP-dependent Clp protease proteolytic subunit OS=Bordetella pertussis GN=clpP PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.512e-20
Identity = 47/111 (42.34%), Postives = 71/111 (63.96%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C G A  +  FLLA G+KG R  +P SRI +  P+G A+GQA DI+ +A E+L +R+ + + L+  TGQP E+I  D  R     +++A+ YGL+D+++
Sbjct:  101 TMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQIQAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDAVSYGLVDKVL 211          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BORPA (ATP-dependent Clp protease proteolytic subunit OS=Bordetella parapertussis GN=clpP PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.512e-20
Identity = 47/111 (42.34%), Postives = 71/111 (63.96%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C G A  +  FLLA G+KG R  +P SRI +  P+G A+GQA DI+ +A E+L +R+ + + L+  TGQP E+I  D  R     +++A+ YGL+D+++
Sbjct:  101 TMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQIQAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDAVSYGLVDKVL 211          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BORBR (ATP-dependent Clp protease proteolytic subunit OS=Bordetella bronchiseptica GN=clpP PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.512e-20
Identity = 47/111 (42.34%), Postives = 71/111 (63.96%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C G A  +  FLLA G+KG R  +P SRI +  P+G A+GQA DI+ +A E+L +R+ + + L+  TGQP E+I  D  R     +++A+ YGL+D+++
Sbjct:  101 TMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQIQAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDAVSYGLVDKVL 211          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP2_PROM9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus (strain MIT 9312) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.512e-20
Identity = 54/115 (46.96%), Postives = 71/115 (61.74%), Query Frame = -3
Query:  268 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 609
            T++ +KS V T CVG A  +  FLLA G KG R A+P SRI +  P  G ++ QA DI  EA E+LR++D +   ++  TGQ FEKI KD  R     ++EA  YGLIDR+I  P
Sbjct:   83 TIKYVKSDVVTICVGLAASMGAFLLAAGTKGKRVALPHSRIMIHQPLGGTSQRQASDIEIEAKEILRIKDMLNMSMADMTGQSFEKIEKDTDRDYFLSAEEAKNYGLIDRVITHP 197          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP2_MYXXD (ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus xanthus (strain DK 1622) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.512e-20
Identity = 52/121 (42.98%), Postives = 70/121 (57.85%), Query Frame = -3
Query:  247 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKEDMP 609
            TMQ +K PV T CVG A  +   LL  G KG R A+P SRI +  P G A+GQA DI  +A E+LR+R YI   + + TG   E+I KD  R     +++A +YGLID ++   R+    P
Sbjct:   79 TMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIHQPLGGAQGQATDIDIQAKEILRLRSYINGLIVKHTGHTIERIEKDTERDYFMSAEDARQYGLIDEVVEKQRVIAPTP 199          
The following BLAST results are available for this feature:
BLAST of CB305120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_ACIAC3.454e-2044.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNY33.454e-2043.22ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_PROMT3.454e-2046.09ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_METCA3.454e-2047.75ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_CARHZ4.512e-2045.95ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BORPE4.512e-2042.34ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BORPA4.512e-2042.34ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BORBR4.512e-2042.34ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_PROM94.512e-2046.96ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_MYXXD4.512e-2042.98ATP-dependent Clp protease proteolytic subunit 2 O... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305120 ID=CB305120; Name=CB305120; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCTCTCAAAACAGGCAAC
CATCAAATTCTTTGTAGGTTTTATTAGATGTAAATTACACATTTCAGAGC
AAACTTCTACAAGAATAATTCGATTGAGTAGTTAATTTTACAAGTAGATG
AATGAAATTACGAAAGATAAAATATTTGATGACTTCAGTCTACTCAGGGG
AGAATCAATGAATACACTAACCAAGACCTGTTCCAGCATCTTTACGAGGC
ATATCTTCCTTAATACGAGGTGGCCTGATTATACGATCTATCAGCCCATA
TTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCCTACTTAAATCCTTCG
TAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGACAACTCCTTGAAAATG
TAATCTCTGACTCTAAGAAGCTCATCTGCTTCATTACGAATGTCATCAGC
CTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAGCAATTCTCGAAAGAG
GCATTGCAGACCGATTACCCTTTTCTCCACCTGCTAGAAGAAACCCTGCT
AAATGATAGGCAAAGCCCACACAGTGAGTGCCAACAGGACTCTTCAAGCT
CTGCATAGTGT
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