CB305120

Overview
NameCB305120
Unique NameCB305120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:487..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_GEOKA (ATP-dependent Clp protease proteolytic subunit OS=Geobacillus kaustophilus GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.892e-20
Identity = 50/111 (45.05%), Postives = 68/111 (61.26%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P S I +  P G A+GQA +I   A  +L +RD + + LS  TGQP E I +D  R     +Q+A+EYG+IDR++
Sbjct:   80 TMQFIKPDVSTICIGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPLGGAQGQATEIEIAAKRILFLRDKLNRILSENTGQPIEVIERDTDRDNFMTAQKAMEYGIIDRVL 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_DESRM (ATP-dependent Clp protease proteolytic subunit OS=Desulfotomaculum reducens (strain MI-1) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.892e-20
Identity = 49/111 (44.14%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA G  G R A+P++RI +  P G  +GQA DI   A E+LR++D +   L+  TGQP E+IT+D  R     ++EA +YGLID ++
Sbjct:   81 TMQYIKPAVSTICLGQAASMGSFLLAAGAPGKRYALPMARIMIHQPLGGVQGQATDIDIHAKEILRMKDLLNDRLAHHTGQPLEQITRDTERDYFMSAEEAKKYGLIDEVM 191          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BORPD (ATP-dependent Clp protease proteolytic subunit OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.892e-20
Identity = 47/111 (42.34%), Postives = 71/111 (63.96%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C G A  +  FLLA G+KG R  +P SRI +  P+G A+GQA DI+ +A E+L +R+ + + L+  TGQP E+I  D  R     +++A+ YGL+D+++
Sbjct:  101 TMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQIQAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDAVSYGLVDKVL 211          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_AZOSE (ATP-dependent Clp protease proteolytic subunit OS=Azoarcus sp. (strain EbN1) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.892e-20
Identity = 47/111 (42.34%), Postives = 70/111 (63.06%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA GEKG R  +P SR+ +  P G  +GQA DI   A E+L +R  + + L++ TGQP E+I KD  R +   + +A+EYG++D+++
Sbjct:   96 TMQFIKPSVSTLCIGQAASMGSFLLAAGEKGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAREILGIRAKLNEMLAKHTGQPIEQIEKDTDRDRFMSAADAVEYGIVDKVL 206          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMM (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus (strain MIT 9313) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.892e-20
Identity = 51/111 (45.95%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T CVG A  +  FLL  G  G RS++  SRI +  P G ARGQA DIR +ADE+L ++D + + L+ +TGQP E+I +D  R       EA+ YGL+D +I
Sbjct:   78 TMQHVKPDVQTVCVGLAASMGAFLLCAGAMGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKDRLNRVLADRTGQPLERIQEDTDRDFFMSPAEAVGYGLVDSVI 188          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_EUBR3 (ATP-dependent Clp protease proteolytic subunit OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.696e-20
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLAGG KG R A+P + I +  P+G A+GQA +I+  A+ +L+ +  + + L+  TG+P+E I  D  R     +QEA EYGLID +I
Sbjct:   80 TMQYIKCDVSTICIGLAASMGAFLLAGGAKGKRYALPNAEIMIHQPSGGAKGQATEIQIAAENILKTKKRLNEILAANTGKPYETIAADTERDNYMSAQEAAEYGLIDSVI 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_DESAH (ATP-dependent Clp protease proteolytic subunit OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=clpP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.696e-20
Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +   LLA G KG R ++P SRI +  P G A+GQA DI+ +A+E+LR+++ +   LS+ TGQ F+KI++D  R       +A EYGL+D ++
Sbjct:   80 TMQYIKPDVATVCIGQAASMGALLLAAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIKIQANEILRMKEVLSGILSKHTGQNFDKISEDTDRDFFMSGDQAKEYGLVDHVV 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_CHLVU (ATP-dependent Clp protease proteolytic subunit OS=Chlorella vulgaris GN=clpP PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.696e-20
Identity = 44/109 (40.37%), Postives = 74/109 (67.89%), Query Frame = -3
Query:  280 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 606
            M  +KS V T CVG A  +A F+LAGG++G R A+P SRI +  P G ++GQA ++ +E+ E++R+R  + +  S +TGQ   ++++D+ R +   ++EA EYGL+D++
Sbjct:   84 MNYIKSEVTTICVGTAASMASFILAGGDRGKRIALPHSRIMVHQPEGGSQGQASEVLSESQEVMRIRRQVGRIYSERTGQTLSRVSRDMDRDQFLSAREAKEYGLVDQV 192          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMP (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.696e-20
Identity = 54/115 (46.96%), Postives = 70/115 (60.87%), Query Frame = -3
Query:  268 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 609
            T++ +KS V T CVG A  +  FLL  G KG R A+P SRI +  P  G ++ QA DI  EA E+LR++D +   +S  TGQ FEKI KD  R     ++EA  YGLIDR+I  P
Sbjct:   83 TIKYVKSDVVTICVGLAASMGAFLLGAGTKGKRVALPHSRIMIHQPLGGTSQRQASDIEIEAREILRIKDMLNHSMSDMTGQSFEKIEKDTDRDYFLSAEEAKNYGLIDRVISHP 197          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP1_BACLD (ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.696e-20
Identity = 50/111 (45.05%), Postives = 68/111 (61.26%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C G A  +  FLLA GEKG R A+P S + +  P G A+GQA +I   A  +L +RD + K L+ +TGQP E I +D  R     ++EA EYGLID+++
Sbjct:   80 TMQFIKPQVSTICTGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNKILAERTGQPLEVIERDTDRDNFKTAEEAKEYGLIDKVL 190          
The following BLAST results are available for this feature:
BLAST of CB305120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_GEOKA5.892e-2045.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESRM5.892e-2044.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BORPD5.892e-2042.34ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AZOSE5.892e-2042.34ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_PROMM5.892e-2045.95ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP_EUBR37.696e-2043.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESAH7.696e-2043.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHLVU7.696e-2040.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_PROMP7.696e-2046.96ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_BACLD7.696e-2045.05ATP-dependent Clp protease proteolytic subunit 1 O... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305120 ID=CB305120; Name=CB305120; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCTCTCAAAACAGGCAAC
CATCAAATTCTTTGTAGGTTTTATTAGATGTAAATTACACATTTCAGAGC
AAACTTCTACAAGAATAATTCGATTGAGTAGTTAATTTTACAAGTAGATG
AATGAAATTACGAAAGATAAAATATTTGATGACTTCAGTCTACTCAGGGG
AGAATCAATGAATACACTAACCAAGACCTGTTCCAGCATCTTTACGAGGC
ATATCTTCCTTAATACGAGGTGGCCTGATTATACGATCTATCAGCCCATA
TTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCCTACTTAAATCCTTCG
TAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGACAACTCCTTGAAAATG
TAATCTCTGACTCTAAGAAGCTCATCTGCTTCATTACGAATGTCATCAGC
CTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAGCAATTCTCGAAAGAG
GCATTGCAGACCGATTACCCTTTTCTCCACCTGCTAGAAGAAACCCTGCT
AAATGATAGGCAAAGCCCACACAGTGAGTGCCAACAGGACTCTTCAAGCT
CTGCATAGTGT
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