CB305120

Overview
NameCB305120
Unique NameCB305120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:487..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_DESOH (ATP-dependent Clp protease proteolytic subunit OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +KS + T C+G A  +  FLLA G KG R ++P SRI +  P G A+GQA DI  +A E+LR++D + + L+  TG+P E+I  D  R      +EA  YG++D +I
Sbjct:   80 TMQYIKSDIATVCIGHAASMGAFLLAAGAKGKRFSLPNSRIMIHQPMGGAQGQASDIAIQAKEILRMKDILNQILAHHTGKPLEQIQVDTDRDFFMSGEEAKAYGIVDHVI 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_CYAP8 (ATP-dependent Clp protease proteolytic subunit OS=Cyanothece sp. (strain PCC 8801) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 54/112 (48.21%), Postives = 70/112 (62.50%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +KS V T CVG A  +  FLLA G  G R A+P +RI +  P  G  R QA DI+ EA+E+LR+R  + + L+ KTGQ  EKI KD  R     ++EA  YGLID++I
Sbjct:   83 TMQYIKSDVITICVGLAASMGAFLLASGTPGKRLALPHARIMIHQPMGGTGRRQATDIQIEANEILRIRQQLNEILAHKTGQTIEKIQKDTDRDYYMSAEEAQAYGLIDKVI 194          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_CLONN (ATP-dependent Clp protease proteolytic subunit OS=Clostridium novyi (strain NT) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLL  G KG R A+P S I +  P G  +GQA DI   A+ +L+++D +   LS +TGQP E I KD+ R     ++EA EYGLID +I
Sbjct:   80 TMQYIKPDVSTICIGMAASMGAFLLTAGAKGKRFALPNSEIMIHQPLGGFQGQATDIGIHANRILKIKDKLNSILSERTGQPLEVIKKDVERDNFMEAEEAKEYGLIDDVI 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_CALS8 (ATP-dependent Clp protease proteolytic subunit OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            T+Q +K  V T CVG A  +  FLLA G KG R A+P S I +  P G  RGQA DI+  A+ +L+++  I + L+ +TGQP E I +D  R     ++EAL+YG+ID++I
Sbjct:   81 TIQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEIMIHQPIGGVRGQATDIKIHAEWILKIKQRINRILAERTGQPIEVIERDTERDFFMTAEEALKYGIIDKVI 191          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_ALKOO (ATP-dependent Clp protease proteolytic subunit OS=Alkaliphilus oremlandii (strain OhILAs) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TM  +K  V T C+G A  +  FLL  G+KG R A+P + I +  P G  RGQA+DIR   + +L++R+ + K ++ +TGQP EK+ KD  R     ++EA  YG+ID +I
Sbjct:   80 TMNYIKPDVSTICIGMAASMGAFLLTAGQKGKRFALPNAEIMIHQPLGGTRGQAEDIRIHTERILKMRETLNKIIAERTGQPLEKVQKDTDRDFFMEAEEARAYGIIDEVI 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMM (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus (strain MIT 9313) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 54/115 (46.96%), Postives = 69/115 (60.00%), Query Frame = -3
Query:  268 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA-RGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 609
            TM+ +KS V T CVG A  +  FLL  G KG R A+P SRI +  P G   + QA DI  EA E+LR++D +   ++  TGQ FEKI KD  R     + EA +YGLIDR+I  P
Sbjct:   83 TMKYVKSDVVTICVGLAASMGAFLLTAGTKGKRLALPHSRIMIHQPLGGTNQRQASDIEIEAREILRIKDMLNHSMAELTGQSFEKIEKDTDRDYFLSAAEAKDYGLIDRVIAHP 197          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP1_BACHD (ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus halodurans GN=clpP1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P S + +  P G  RGQA DI      +L +R+ + + L+ +TGQP E+I KD  R     +++A EYGLID++I
Sbjct:   80 TMQYIKPNVSTICIGMAASMGAFLLAAGAKGKRFALPNSEVMIHQPLGGTRGQASDIEIHTRRILEMRETLNRILAERTGQPLEQIAKDTDRDNFMTAEKAREYGLIDKVI 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_THEPX (ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter sp. (strain X514) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.313e-19
Identity = 50/111 (45.05%), Postives = 68/111 (61.26%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T CVG A  +A FLLA G KG R A+P S I +  P G  +GQA DI+  A+ +L++RD + K L+  TGQP EKI  D  R     +++A  YG+ID ++
Sbjct:   80 TMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQGQATDIKIHAERILKLRDKLDKILAENTGQPIEKIKADTERDFFMDAEDAKAYGIIDEVL 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_THEP3 (ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.313e-19
Identity = 50/111 (45.05%), Postives = 68/111 (61.26%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T CVG A  +A FLLA G KG R A+P S I +  P G  +GQA DI+  A+ +L++RD + K L+  TGQP EKI  D  R     +++A  YG+ID ++
Sbjct:   80 TMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQGQATDIKIHAERILKLRDKLDKILAENTGQPIEKIKADTERDFFMDAEDAKAYGIIDEVL 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_SHEAM (ATP-dependent Clp protease proteolytic subunit OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.313e-19
Identity = 49/111 (44.14%), Postives = 67/111 (60.36%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLAGGEKG R  +P SR+ +  P G  +GQA DI   A E+L ++  + + LS  TGQP E I +D  R     + +A+EYGLID ++
Sbjct:   89 TMQFIKPKVSTVCIGQACSMGAFLLAGGEKGMRHCLPNSRVMIHQPLGGFQGQASDIAIHAQEILGIKHKLNQMLSHHTGQPMEVIERDTDRDNFMSATQAVEYGLIDSVL 199          
The following BLAST results are available for this feature:
BLAST of CB305120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_DESOH1.005e-1943.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CYAP81.005e-1948.21ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLONN1.005e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CALS81.005e-1944.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ALKOO1.005e-1941.44ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_PROMM1.005e-1946.96ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_BACHD1.005e-1943.24ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_THEPX1.313e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP31.313e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SHEAM1.313e-1944.14ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305120 ID=CB305120; Name=CB305120; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCTCTCAAAACAGGCAAC
CATCAAATTCTTTGTAGGTTTTATTAGATGTAAATTACACATTTCAGAGC
AAACTTCTACAAGAATAATTCGATTGAGTAGTTAATTTTACAAGTAGATG
AATGAAATTACGAAAGATAAAATATTTGATGACTTCAGTCTACTCAGGGG
AGAATCAATGAATACACTAACCAAGACCTGTTCCAGCATCTTTACGAGGC
ATATCTTCCTTAATACGAGGTGGCCTGATTATACGATCTATCAGCCCATA
TTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCCTACTTAAATCCTTCG
TAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGACAACTCCTTGAAAATG
TAATCTCTGACTCTAAGAAGCTCATCTGCTTCATTACGAATGTCATCAGC
CTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAGCAATTCTCGAAAGAG
GCATTGCAGACCGATTACCCTTTTCTCCACCTGCTAGAAGAAACCCTGCT
AAATGATAGGCAAAGCCCACACAGTGAGTGCCAACAGGACTCTTCAAGCT
CTGCATAGTGT
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