CB305120

Overview
NameCB305120
Unique NameCB305120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:487..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_MANSM (ATP-dependent Clp protease proteolytic subunit OS=Mannheimia succiniciproducens (strain MBEL55E) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.313e-19
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T CVG A  +  FLLAGG  G R+A+P +R+ +  P G  RGQA DI+  A E+L+++  + + L+  TGQPFE I +D  R     +++A  YGLID ++
Sbjct:   80 TMQFIKPDVRTLCVGQACSMGAFLLAGGAAGKRAALPHARVMIHQPLGGFRGQASDIQIHAQEILKIKQTLNERLAFHTGQPFEVIERDTDRDNFMSAEDAKNYGLIDSVL 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_LEPCP (ATP-dependent Clp protease proteolytic subunit OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.313e-19
Identity = 50/111 (45.05%), Postives = 68/111 (61.26%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA G KG R ++P S+I +  P G A+GQA DI   A E+L+ R+ + + L+ +TGQ  EKI  D  R     S+EA  YGLID++I
Sbjct:   88 TMQFIKPQVSTLCMGLAASMGAFLLAAGAKGKRFSLPNSKIMIHQPLGGAQGQATDIEIHAREILKTREQLNRILAERTGQSLEKIQNDTERDYFMSSEEAQTYGLIDQVI 198          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_FRAP2 (ATP-dependent Clp protease proteolytic subunit OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=clpP PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.313e-19
Identity = 50/111 (45.05%), Postives = 65/111 (58.56%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +   LLAGG KG R ++P S+I +  P G  RGQA DI   A  +LR++D + K L+  TGQ  E I +D  R     + EA EYGLID +I
Sbjct:   83 TMQFIKPDVNTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVRDTDRDNFMMADEAKEYGLIDHVI 193          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP2_METCA (ATP-dependent Clp protease proteolytic subunit 2 OS=Methylococcus capsulatus GN=clpP2 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.313e-19
Identity = 52/111 (46.85%), Postives = 65/111 (58.56%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T CVG A  +   LLAGG  G R  +P SRI +  P G  +GQA DI   A E+L VRD + K L+  TGQP EKI  D  R    G  +A+ YGLID+++
Sbjct:   77 TMQFIKPDVSTLCVGQAASMGALLLAGGAAGKRYCLPHSRIMIHQPLGGFQGQASDIDIHAREILAVRDRLNKILAHHTGQPIEKIQIDTDRDNFMGGDDAVSYGLIDKVL 187          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_SYNAS (ATP-dependent Clp protease proteolytic subunit OS=Syntrophus aciditrophicus (strain SB) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.714e-19
Identity = 52/111 (46.85%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TM+ +K PV T CVG A  +   LLA GE+G RSA+P SRI +  P G  +GQA DI  +A E+LR++D +   L+  T QP ++I  D  R     SQ+A EYG+ID II
Sbjct:   80 TMRYIKPPVATVCVGQAASMGALLLAAGEQGKRSALPHSRILIHQPLGGFQGQATDIDIQAREILRLKDELSLILADLTNQPLDRIKTDTERDYYMTSQQAKEYGIIDEII 190          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_STAHJ (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.714e-19
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = -3
Query:  271 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 609
            T+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + K L+ +TGQ  EKI KD  R     + EA EYGLID +++P
Sbjct:   80 TIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNKILAERTGQSIEKIQKDTDRDNFLTADEAKEYGLIDNVMQP 192          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_MOOTA (ATP-dependent Clp protease proteolytic subunit OS=Moorella thermoacetica (strain ATCC 39073) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.714e-19
Identity = 53/123 (43.09%), Postives = 71/123 (57.72%), Query Frame = -3
Query:  241 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKEDMPRK 609
            TMQ ++  V T CVG A  +  FLLA G KG R A+P S I +  P G  +GQA DI   A  +L +RD + + LS  TG+P E+I +D  R     ++EA EYGLID +I     K ++P K
Sbjct:   81 TMQYIRPDVSTICVGLAASMGAFLLAAGAKGKRFALPNSEIMIHQPMGGTQGQAVDIEIHAKRILAIRDNLNRILSEITGKPLEQIARDTDRDHFMTAREAREYGLIDEVI----TKRELPAK 199          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_DECAR (ATP-dependent Clp protease proteolytic subunit OS=Dechloromonas aromatica (strain RCB) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.714e-19
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLL  G KG R A+P SR+ +  P G  +GQA DI   A E+L +RD + + ++  +GQP E+I KD  R     + EA EYGLID+++
Sbjct:   93 TMQFIKPDVSTLCIGQAASMGAFLLNAGAKGKRFALPNSRVMIHQPLGGFQGQASDIAIHAKEILSIRDRLNRIMAEHSGQPLERIEKDTDRDNFLSAAEAAEYGLIDKVL 203          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BORA1 (ATP-dependent Clp protease proteolytic subunit OS=Bordetella avium (strain 197N) GN=clpP PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.714e-19
Identity = 47/111 (42.34%), Postives = 71/111 (63.96%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C G A  +  FLLA G+KG R ++P SRI +  P+G A+GQA DI+ +A E+L +R+ + + L+  TGQ  E+I  D  R     +++AL YGL+D+++
Sbjct:   85 TMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFSLPNSRIMIHQPSGGAQGQASDIQIQAKEILDLRERLNRILAENTGQSMERIAIDTERDTFMSAEDALSYGLVDKVL 195          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP3_PROMA (ATP-dependent Clp protease proteolytic subunit 3 OS=Prochlorococcus marinus GN=clpP3 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.714e-19
Identity = 49/111 (44.14%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +   + T C G A  +  FLLAGG KG R A+P SRI +  P G A+GQA +I  +A E+L +++ +   L+  TGQ  EKI++D  R      QEA+EYGLID+++
Sbjct:  102 TMQQVNPDIVTMCYGLAASMGAFLLAGGSKGKRLALPNSRIMIHQPLGGAQGQAVEIEIQAKEILFLKETLNNLLAEHTGQSLEKISEDTDRDHFLSPQEAVEYGLIDKVV 212          
The following BLAST results are available for this feature:
BLAST of CB305120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_MANSM1.313e-1943.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEPCP1.313e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FRAP21.313e-1945.05ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_METCA1.313e-1946.85ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_SYNAS1.714e-1946.85ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAHJ1.714e-1942.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MOOTA1.714e-1943.09ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DECAR1.714e-1943.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BORA11.714e-1942.34ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_PROMA1.714e-1944.14ATP-dependent Clp protease proteolytic subunit 3 O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305120 ID=CB305120; Name=CB305120; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCTCTCAAAACAGGCAAC
CATCAAATTCTTTGTAGGTTTTATTAGATGTAAATTACACATTTCAGAGC
AAACTTCTACAAGAATAATTCGATTGAGTAGTTAATTTTACAAGTAGATG
AATGAAATTACGAAAGATAAAATATTTGATGACTTCAGTCTACTCAGGGG
AGAATCAATGAATACACTAACCAAGACCTGTTCCAGCATCTTTACGAGGC
ATATCTTCCTTAATACGAGGTGGCCTGATTATACGATCTATCAGCCCATA
TTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCCTACTTAAATCCTTCG
TAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGACAACTCCTTGAAAATG
TAATCTCTGACTCTAAGAAGCTCATCTGCTTCATTACGAATGTCATCAGC
CTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAGCAATTCTCGAAAGAG
GCATTGCAGACCGATTACCCTTTTCTCCACCTGCTAGAAGAAACCCTGCT
AAATGATAGGCAAAGCCCACACAGTGAGTGCCAACAGGACTCTTCAAGCT
CTGCATAGTGT
back to top