CB305120

Overview
NameCB305120
Unique NameCB305120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:487..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_PSYA2 (ATP-dependent Clp protease proteolytic subunit OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.239e-19
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TM  +K  V T C+G AY +  FLLA G+KG R A+  +R+ +  P+G A+GQA DI   A E+L+ R  + + L+ +TGQ  EKI KD+ R     ++EA EYGLID ++
Sbjct:  108 TMNFIKPEVSTICMGGAYSMGSFLLAAGQKGKRYALANARVMIHQPSGGAQGQATDIEINAREILKTRARLNEILAERTGQSVEKIEKDVERDYWLDAKEAKEYGLIDEVL 218          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_MACCJ (ATP-dependent Clp protease proteolytic subunit OS=Macrococcus caseolyticus (strain JCSC5402) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.239e-19
Identity = 48/113 (42.48%), Postives = 67/113 (59.29%), Query Frame = -3
Query:  271 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A  +L+ R+ + + L+ +TGQP EKI KD  R     + EA  YGLID ++ P
Sbjct:   80 TMQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAARHILKTREKLNRILAERTGQPIEKIEKDTDRDNFLTADEAKAYGLIDEVMHP 192          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_DIAST (ATP-dependent Clp protease proteolytic subunit OS=Diaphorobacter sp. (strain TPSY) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.239e-19
Identity = 48/111 (43.24%), Postives = 68/111 (61.26%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C GFA  +  FLLA G KG R ++P S+I +    G ARGQA DI   A ++LR +D + + L+ +TGQP EK+  D  R     + EA +YG++D++I
Sbjct:   88 TMQFIKPDVSTLCCGFAASMGAFLLAAGAKGKRYSLPNSKIMIHQVLGGARGQATDIEIHARDILRTKDQMNRILAERTGQPIEKVKADTERDYFMTADEAKDYGIVDQVI 198          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_BURS3 (ATP-dependent Clp protease proteolytic subunit OS=Burkholderia sp. (strain 383) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.239e-19
Identity = 48/111 (43.24%), Postives = 70/111 (63.06%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TMQ +K  V T C+G A  +  FLLA G KG R A+P SR+ +  P G ARGQA DI  +A E+L +++ + + L++ TGQ  E+I +D  R     S++A  YGLID+++
Sbjct:  103 TMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMIHQPLGGARGQASDIEIQAREILYLKERLNQLLAQHTGQDVERIARDTDRDNFMSSEDAKAYGLIDQVL 213          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNP6 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.239e-19
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TM  ++  V T CVG A  +  FLLA G KG R+++  SRI +  P G A+GQA DI  +A+E+L ++  + + L+ +TGQP  +I  D  R     + EA+EYGLIDR+I
Sbjct:   78 TMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQAKDIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVEYGLIDRVI 188          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP1_SYNE7 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.239e-19
Identity = 48/111 (43.24%), Postives = 69/111 (62.16%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TM  ++  V T CVG A  +  FLLA G KG R+++  SRI +  P G A+GQA DI  +A+E+L ++  + + L+ +TGQP  +I  D  R     + EA+EYGLIDR+I
Sbjct:   78 TMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQAKDIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVEYGLIDRVI 188          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_VEREI (ATP-dependent Clp protease proteolytic subunit OS=Verminephrobacter eiseniae (strain EF01-2) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 47/111 (42.34%), Postives = 67/111 (60.36%), Query Frame = -3
Query:  277 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 609
            TM  +K  V T C G A  +  FLLA G KG R A+P S++ +  P G  +GQA +I   A E+L+ R+ + K L+ +TGQP EKI +D  R     + E+ EYGL+D++I
Sbjct:   88 TMNFIKPDVSTLCTGMAASMGAFLLAAGAKGKRFALPNSKVMIHQPLGGMQGQATEIEIHAREILKTREQLNKILAERTGQPLEKIQRDTERDYFLSADESREYGLVDQVI 198          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_STAAW (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MW2) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = -3
Query:  271 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 609
            T+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   80 TIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_STAAT (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = -3
Query:  271 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 609
            T+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   80 TIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192          
BLAST of CB305120 vs. ExPASy Swiss-Prot
Match: CLPP_STAAS (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MSSA476) GN=clpP PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = -3
Query:  271 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 609
            T+Q +K  V T C+G A  +  FLLA G KG R A+P + + +  P G A+GQA +I   A+ +L+ R+ + + LS +TGQ  EKI KD  R     ++EA EYGLID ++ P
Sbjct:   80 TIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP 192          
The following BLAST results are available for this feature:
BLAST of CB305120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_PSYA22.239e-1944.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MACCJ2.239e-1942.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DIAST2.239e-1943.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BURS32.239e-1943.24ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_SYNP62.239e-1943.24ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_SYNE72.239e-1943.24ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_VEREI2.924e-1942.34ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAW2.924e-1942.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAT2.924e-1942.48ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAS2.924e-1942.48ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305120 ID=CB305120; Name=CB305120; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCTCTCAAAACAGGCAAC
CATCAAATTCTTTGTAGGTTTTATTAGATGTAAATTACACATTTCAGAGC
AAACTTCTACAAGAATAATTCGATTGAGTAGTTAATTTTACAAGTAGATG
AATGAAATTACGAAAGATAAAATATTTGATGACTTCAGTCTACTCAGGGG
AGAATCAATGAATACACTAACCAAGACCTGTTCCAGCATCTTTACGAGGC
ATATCTTCCTTAATACGAGGTGGCCTGATTATACGATCTATCAGCCCATA
TTCAAGAGCCTCCTGGGAACCAAAGCGTTTAATCCTACTTAAATCCTTCG
TAATCTTCTCAAAGGGCTGACCTGTTTTCCTAGACAACTCCTTGAAAATG
TAATCTCTGACTCTAAGAAGCTCATCTGCTTCATTACGAATGTCATCAGC
CTGACCGCGAGCTGCACCAGCTGGAGAGTCTAAAGCAATTCTCGAAAGAG
GCATTGCAGACCGATTACCCTTTTCTCCACCTGCTAGAAGAAACCCTGCT
AAATGATAGGCAAAGCCCACACAGTGAGTGCCAACAGGACTCTTCAAGCT
CTGCATAGTGT
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