CB305122

Overview
NameCB305122
Unique NameCB305122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7745 contig Csv1_Contig7745:83..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37_BOVIN (60S ribosomal protein L37 OS=Bos taurus GN=RPL37 PE=3 SV=4)

HSP 1 Score: 129.028 bits (323), Expect = 1.476e-29
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = -2
Query:  300 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREGT 545
            M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR T GTGRMR+L+ V RRF+ GFREGT
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37_ICTPU (60S ribosomal protein L37 OS=Ictalurus punctatus GN=rpl37 PE=3 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 1.928e-29
Identity = 58/82 (70.73%), Postives = 66/82 (80.49%), Query Frame = -2
Query:  300 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREGT 545
            M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR T GTGRMR+++ V RRF++GFREGT
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRSTTGTGRMRHMKVVFRRFRNGFREGT 82          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37_EMENI (60S ribosomal protein L37 OS=Emericella nidulans GN=rpl37 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.632e-28
Identity = 58/82 (70.73%), Postives = 65/82 (79.27%), Query Frame = -2
Query:  300 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREGT 545
            M KGT SFGKR NKTHTLC RCGRRS+H+QKS CA C YPAA+ R YNWS KA RRKT G+GR  +LR V RRFK+GF+ GT
Sbjct:    1 MTKGTSSFGKRHNKTHTLCRRCGRRSYHIQKSTCANCGYPAAKTRKYNWSEKAKRRKTTGSGRTAHLRDVHRRFKNGFQVGT 82          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37_DEBHA (60S ribosomal protein L37 OS=Debaryomyces hansenii GN=RPL37 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.058e-27
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = -2
Query:  303 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREG 545
            M KGT S GKR NK+H LC RCG+RSFH+QK  CA+C YPAA+ R++NW+ KA RR+T GTGRM YL+HV RRFK+GF+ G
Sbjct:    1 MSKGTPSLGKRHNKSHVLCNRCGKRSFHVQKKTCASCGYPAAKLRSHNWATKAKRRRTTGTGRMAYLKHVSRRFKNGFQTG 81          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37B_SCHPO (60S ribosomal protein L37-B OS=Schizosaccharomyces pombe GN=rpl37b PE=1 SV=4)

HSP 1 Score: 122.479 bits (306), Expect = 1.381e-27
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = -2
Query:  303 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREG 545
            M KGT SFG R NK+HT+C RCG+RSFH+QKS CA C YPAA+ R+YNW  KA RR+T GTGRM YL+ V R FK+GFR G
Sbjct:    1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRSG 81          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37_CANAL (60S ribosomal protein L37 (Fragment) OS=Candida albicans GN=RPL37 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.804e-27
Identity = 52/79 (65.82%), Postives = 66/79 (83.54%), Query Frame = -2
Query:  303 KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREG 539
            +GT S GKR NK+HTLC RCGRRSFH+QK  C++C YPAA+ R++NW++KA RR+T GTGRM YL+HV RRFK+GF+ G
Sbjct:    1 EGTPSLGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKMRSHNWALKAKRRRTTGTGRMAYLKHVTRRFKNGFQTG 79          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37A_SCHPO (60S ribosomal protein L37-A OS=Schizosaccharomyces pombe GN=rpl37a PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.804e-27
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = -2
Query:  303 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREG 545
            M KGT SFG R NK+HT+C RCG+RSFH+QKS CA C YPAA+ R+YNW  KA RR+T GTGRM YL+ V R FK+GFR G
Sbjct:    1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRAG 81          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL372_DROME (Probable 60S ribosomal protein L37-B OS=Drosophila melanogaster GN=RpL37b PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.250e-27
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = -2
Query:  303 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREG 545
            M KGT SFGKR NKTHT+C RCG  S+HLQKS+C+ C YPAA+ R++NWS KA  RK  GTGRMRYL+++ RRF++G REG
Sbjct:    1 MTKGTTSFGKRHNKTHTICRRCGNSSYHLQKSKCSQCGYPAAKTRSFNWSRKAKGRKAQGTGRMRYLKNLRRRFRNGLREG 81          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37_DICDI (60S ribosomal protein L37 OS=Dictyostelium discoideum GN=rpl37 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.954e-27
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = -2
Query:  300 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREGT 545
            M KGT SFG+R  K+HTLC RCG+ SFH+QK  CA+C YP+A+ R+YNWS+KA RRKT GTGR RYL+ V +RF SGF+E +
Sbjct:    1 MTKGTFSFGRRHTKSHTLCRRCGKSSFHIQKKTCASCGYPSAKTRSYNWSIKAQRRKTTGTGRTRYLKTVHKRFNSGFKEAS 82          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37_SCHMA (60S ribosomal protein L37 OS=Schistosoma mansoni GN=RPL37 PE=3 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 1.169e-26
Identity = 53/81 (65.43%), Postives = 63/81 (77.78%), Query Frame = -2
Query:  303 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREG 545
            M KGT SFGKR NK+HT C RCGR+S+H+QK  C++C YP+AR R YNWS KA RR+T GTGRM +L+ V RRFK GFR G
Sbjct:    1 MTKGTTSFGKRHNKSHTQCRRCGRKSYHIQKKTCSSCGYPSARLRKYNWSEKAKRRRTTGTGRMLHLKRVHRRFKQGFRSG 81          
The following BLAST results are available for this feature:
BLAST of CB305122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL37_BOVIN1.476e-2971.9560S ribosomal protein L37 OS=Bos taurus GN=RPL37 P... [more]
RL37_ICTPU1.928e-2970.7360S ribosomal protein L37 OS=Ictalurus punctatus G... [more]
RL37_EMENI1.632e-2870.7360S ribosomal protein L37 OS=Emericella nidulans G... [more]
RL37_DEBHA1.058e-2765.4360S ribosomal protein L37 OS=Debaryomyces hansenii... [more]
RL37B_SCHPO1.381e-2766.6760S ribosomal protein L37-B OS=Schizosaccharomyces... [more]
RL37_CANAL1.804e-2765.8260S ribosomal protein L37 (Fragment) OS=Candida al... [more]
RL37A_SCHPO1.804e-2766.6760S ribosomal protein L37-A OS=Schizosaccharomyces... [more]
RL372_DROME5.250e-2765.43Probable 60S ribosomal protein L37-B OS=Drosophila... [more]
RL37_DICDI8.954e-2763.4160S ribosomal protein L37 OS=Dictyostelium discoid... [more]
RL37_SCHMA1.169e-2665.4360S ribosomal protein L37 OS=Schistosoma mansoni G... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_E04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_E04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305122 ID=CB305122; Name=CB305122; organism=Citrus sinensis; type=EST; length=555bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGTCAAAACATGAAGTAAT
TAAGGGAGGTCAAACAACAATAAACTCATTCATCTTGTCCAAAATTGAAA
AAGACTACATAGTAATCATAATTGAAAACAACTAAGCACAAAAACAAATA
ACATCCTTTTTCAAAATTATGTTCCCATGAATCTTGTCTCCACACATTAA
AGAAGACTAAATCTATAATGAGGTGCTGATTCACGCCCAAAATTACCCTT
CAACTCCTTAAGCAGAGGCAGCTGCTCCCTTCTTCCTTGGTGCTGCCTGA
GTACCTTCTCTGAAGCCGCTCTTGAACCTGCGAGGGACATGGCGCAGATA
CCTCATCCTGCCGGTTCCAGGGGTCTTTCTTCGGATTGCCTTCACACTCC
AGTTATACGTTCTCTTGCGAGCAGCGGGGTAAGCACAAGCAGCGCAACGA
CTCTTCTGAAGATGGAAGCTGCGACGGCCACATCGCACACACAAAGTGTG
CGTCTTGTTTCTCCTCTTACCAAAACTCCCTGTGCCCTTACCCATTGAAG
CGTAT
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