CB305122

Overview
NameCB305122
Unique NameCB305122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7745 contig Csv1_Contig7745:83..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37_CAEEL (60S ribosomal protein L37 OS=Caenorhabditis elegans GN=rpl-37 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.206e-25
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = -2
Query:  300 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREGT 545
            M KGT +FGK+  K+HTLC RCG+ SFH+QK RCA+C Y  A+KRTYNW  K+IRR+T GTGR R+LR V  RF++GFR  T
Sbjct:    1 MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYQDAKKRTYNWGAKSIRRRTTGTGRTRHLRDVNARFRNGFRGTT 82          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37_LEIIN (60S ribosomal protein L37 OS=Leishmania infantum GN=RPL37 PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.338e-22
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = -2
Query:  309 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFR 545
            M KGT S G+R  +TH LC RCGR S+H+Q  RCAACAYP A +R YNWSVKAI+R+  GTGR RYL+ V RR  + F+
Sbjct:    1 MTKGTTSMGQRHGRTHILCRRCGRNSYHVQWERCAACAYPRASRRRYNWSVKAIKRRRTGTGRCRYLKVVNRRIANHFK 79          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37_LEIDO (60S ribosomal protein L37 OS=Leishmania donovani GN=RPL37 PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.338e-22
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = -2
Query:  309 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFR 545
            M KGT S G+R  +TH LC RCGR S+H+Q  RCAACAYP A +R YNWSVKAI+R+  GTGR RYL+ V RR  + F+
Sbjct:    1 MTKGTTSMGQRHGRTHILCRRCGRNSYHVQWERCAACAYPRASRRRYNWSVKAIKRRRTGTGRCRYLKVVNRRIANHFK 79          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37_SOLLC (60S ribosomal protein L37 (Fragment) OS=Solanum lycopersicum GN=RPL37 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.085e-19
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = -2
Query:  297 RCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREGTQ 449
            RC+ACAYPAAR R YNWSVKA+RRKT GTGRMRYLR+VPRRFK+ FREGT+
Sbjct:    2 RCSACAYPAARLRKYNWSVKALRRKTTGTGRMRYLRNVPRRFKTNFREGTE 52          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37_ENCCU (60S ribosomal protein L37 OS=Encephalitozoon cuniculi GN=RPL37 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.584e-15
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = -2
Query:  309 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFR 545
            M KGT SFGK+  +   +C RCGR+S+H QK+ C++C YP  + R    S+KA RR+T GTGRMRY++   R  K+G +
Sbjct:    1 MSKGTASFGKKNKRNTEMCRRCGRQSYHKQKNSCSSCGYPNPKMRNPG-SIKARRRRTIGTGRMRYMKRELRAAKNGHK 78          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37_METKA (50S ribosomal protein L37e OS=Methanopyrus kandleri GN=rpl37e PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = -2
Query:  375 MGKGTGSFGKR-RNKTHTLCVRCGRRSFHLQKSRCAACAYPAARK-RTYNWSVKAIRRK 545
            M KGT SFGKR + KTH  C RCGRR++H++K  CAAC +  +R+ R Y+W  K + RK
Sbjct:    1 MAKGTPSFGKRNKTKTHVRCRRCGRRAYHVRKGYCAACGFGRSRRIRRYSWQNKKVNRK 59          
The following BLAST results are available for this feature:
BLAST of CB305122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL37_CAEEL2.206e-2562.2060S ribosomal protein L37 OS=Caenorhabditis elegan... [more]
RL37_LEIIN1.338e-2260.7660S ribosomal protein L37 OS=Leishmania infantum G... [more]
RL37_LEIDO1.338e-2260.7660S ribosomal protein L37 OS=Leishmania donovani G... [more]
RL37_SOLLC3.085e-1982.3560S ribosomal protein L37 (Fragment) OS=Solanum ly... [more]
RL37_ENCCU1.584e-1548.1060S ribosomal protein L37 OS=Encephalitozoon cunic... [more]
RL37_METKA5.274e-1152.5450S ribosomal protein L37e OS=Methanopyrus kandler... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_E04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_E04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305122 ID=CB305122; Name=CB305122; organism=Citrus sinensis; type=EST; length=555bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGTCAAAACATGAAGTAAT
TAAGGGAGGTCAAACAACAATAAACTCATTCATCTTGTCCAAAATTGAAA
AAGACTACATAGTAATCATAATTGAAAACAACTAAGCACAAAAACAAATA
ACATCCTTTTTCAAAATTATGTTCCCATGAATCTTGTCTCCACACATTAA
AGAAGACTAAATCTATAATGAGGTGCTGATTCACGCCCAAAATTACCCTT
CAACTCCTTAAGCAGAGGCAGCTGCTCCCTTCTTCCTTGGTGCTGCCTGA
GTACCTTCTCTGAAGCCGCTCTTGAACCTGCGAGGGACATGGCGCAGATA
CCTCATCCTGCCGGTTCCAGGGGTCTTTCTTCGGATTGCCTTCACACTCC
AGTTATACGTTCTCTTGCGAGCAGCGGGGTAAGCACAAGCAGCGCAACGA
CTCTTCTGAAGATGGAAGCTGCGACGGCCACATCGCACACACAAAGTGTG
CGTCTTGTTTCTCCTCTTACCAAAACTCCCTGTGCCCTTACCCATTGAAG
CGTAT
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