CB305123

Overview
NameCB305123
Unique NameCB305123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1582 contig Csv1_Contig1582:574..1120. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305123 vs. ExPASy Swiss-Prot
Match: 1433G_SHEEP (14-3-3 protein gamma (Fragments) OS=Ovis aries GN=YWHAG PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.591e-20
Identity = 51/78 (65.38%), Postives = 59/78 (75.64%), Query Frame = -3
Query:  307 LPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLSEESYKGSTLIMQLLRDNLPLWTSDLPEEGG 540
            + PTHPIRLGLALN+SVFYYEI             AFD+AIAELD+L+E+SYK STLIMQLLRDNL LWTSD  ++ G
Sbjct:   92 MQPTHPIRLGLALNYSVFYYEIT------------AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDG 157          
BLAST of CB305123 vs. ExPASy Swiss-Prot
Match: 1433X_MAIZE (14-3-3-like protein (Fragment) OS=Zea mays PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.079e-20
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = -3
Query:  295 ILNSPERACHLAKQAFDEAIAELDSLSEESYKGSTLIMQLLRDNLPLWTSDLPEEGGEQSK 477
            ILNSP+RAC+LAKQAFDEAI+ELDSL EESYK STLIMQLL DNL LWTSD  E+GG++ K
Sbjct:    1 ILNSPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLLXDNLTLWTSDTNEDGGDEIK 61          
BLAST of CB305123 vs. ExPASy Swiss-Prot
Match: 14338_ORYSJ (Putative 14-3-3-like protein GF14-H OS=Oryza sativa subsp. japonica GN=GF14H PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.650e-15
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = -3
Query:  274 EILNSPERACHLAKQAFDEAIAELDSLSEESYKGSTLIMQLLRDNLPLWTSDLPEEGGEQSKGDEVQAE 480
            EI+NSPERA  +AKQA DEA AE++S   E YK S L+MQLL++NL LWTS+L   GGE SK D+V  E
Sbjct:  163 EIMNSPERASQVAKQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSEL--TGGETSKDDDVVME 229          
The following BLAST results are available for this feature:
BLAST of CB305123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
1433G_SHEEP1.591e-2065.3814-3-3 protein gamma (Fragments) OS=Ovis aries GN=... [more]
1433X_MAIZE2.079e-2078.6914-3-3-like protein (Fragment) OS=Zea mays PE=3 SV... [more]
14338_ORYSJ7.650e-1560.87Putative 14-3-3-like protein GF14-H OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_E05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_E05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305123 ID=CB305123; Name=CB305123; organism=Citrus sinensis; type=EST; length=548bp
TTTTNNNTTTTTTTTTTTTTTTTTTTTTTTCAAACCTAGAACTAAAATAG
TTTTCAAACTAGCACTAAAATAGCATAGCAAGTCCTATCACGAGAAGTAG
CAAACTCAATTATATGTAAACAGAAAATAGCACAACAACCTGAAATTAAA
AACATGTAATAAGTATTATACAAGCCAAATGTTCTTTCAATCCCTATACT
ACTAATACTAATAGATATTAGAACCCAACTAGCACAATTTCTCCTCCTGA
TGCTCATGCATCCCCGGCTAGCTCTCTGCTTGAACTTCATCACCTTTAGA
TTGCTCACCTCCCTCCTCCGGTAGATCCGAGGTCCACAAGGGGAGATTAT
CCCGAAGAAGCTGCATAATAAGGGTGCTGCCCTTGTAGGACTCTTCACTA
AGGCTATCAAGTTCAGCAATAGCCTCATCAAATGCTTGTTTAGCCAGGTG
GCAAGCCCTCTCAGGTGAGTTCAAAATCTCATAGTAGAAAACAGAAAAGT
TAAGAGCCAGGCCAAGTCTGATTGGATGAGTCGGGGGTAACTCTGAGG
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