CB305128

Overview
NameCB305128
Unique NameCB305128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305128_ssr433 microsatellite CB305128_ssr433:433..444. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: 13S3_FAGES (13S globulin seed storage protein 3 OS=Fagopyrum esculentum GN=FAGAG1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.783e-19
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            QC+IQ L A EP ++V SEAGVTE WD +  + +CA     R  IQ  GLL+P+Y+N P I +V QGRG+ GVV PGC ET
Sbjct:   43 QCDIQRLTASEPSRRVRSEAGVTEIWDHDTPEFRCAGFVAVRVVIQPGGLLLPSYSNAPYITFVEQGRGVQGVVVPGCPET 123          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: 13S1_FAGES (13S globulin seed storage protein 1 OS=Fagopyrum esculentum GN=FA02 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            QC++Q L A EP ++V SEAGVTE WD +  + +CA     R  IQ  GLL+P+Y+N P I +V QGRG+ GVV PGC ET
Sbjct:   43 QCDVQRLTASEPSRRVRSEAGVTEIWDNDTPEFRCAGFVAVRVVIQPGGLLLPSYSNAPYITFVEQGRGVQGVVVPGCPET 123          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: LEGJ_PEA (Legumin J OS=Pisum sativum GN=LEGJ PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19
Identity = 37/81 (45.68%), Postives = 61/81 (75.31%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            QC + ++NALEP  +VESEAG+TE W+ N+ +L+CA V++ R  I   GL +P+++ +P++ +++QG+G+ G+ FPGC ET
Sbjct:   32 QCQLDSINALEPDHRVESEAGLTETWNPNHPELKCAGVSLIRRTIDPNGLHLPSFSPSPQLIFIIQGKGVLGLSFPGCPET 112          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: 13S2_FAGES (13S globulin seed storage protein 2 OS=Fagopyrum esculentum GN=FA18 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            QC+IQ L A EP ++V SEAGVTE WD +  + +C      R  IQ  GLL+P+Y+N P I +V QGRG+ GVV PGC ET
Sbjct:   45 QCDIQRLTASEPSRRVRSEAGVTEIWDHDTPEFRCTGFVAVRVVIQPGGLLLPSYSNAPYITFVEQGRGVQGVVIPGCPET 125          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: GLUA1_ORYSJ (Glutelin type-A 1 OS=Oryza sativa subsp. japonica GN=GLUA1 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C    L A EP + V S+AG TEF+D +NEQ QC  V+V R  I+ RGLL+P YTN   + Y++QGRGI G  FPGC E+
Sbjct:   45 ECRFDRLQAFEPIRSVRSQAGTTEFFDVSNEQFQCTGVSVVRRVIEPRGLLLPHYTNGASLVYIIQGRGITGPTFPGCPES 125          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: SSG1_AVESA (12S seed storage globulin 1 OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.452e-18
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = -2
Query:  456 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 695
            C    L A EP ++V S+AG+TE++D+ NEQ +CA V+V R  I+ +GLL+P Y N P + Y++QGRG  G+ FPGC  T
Sbjct:   45 CKFDRLQAFEPLRQVRSQAGITEYFDEQNEQFRCAGVSVIRRVIEPQGLLLPQYHNAPGLVYILQGRGFTGLTFPGCPAT 124          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: GLUA2_ORYSJ (Glutelin type-A 2 OS=Oryza sativa subsp. japonica GN=GLUA2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = -2
Query:  456 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 695
            C    L A EP + V S+AG TEF+D +NE  QC  V+V R  I+ RGLL+P YTN   + Y++QGRGI G  FPGC ET
Sbjct:   46 CRFDRLQAFEPIRSVRSQAGTTEFFDVSNELFQCTGVSVVRRVIEPRGLLLPHYTNGASLVYIIQGRGITGPTFPGCPET 125          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: SSG2_AVESA (12S seed storage globulin 2 OS=Avena sativa PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.217e-17
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = -2
Query:  456 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 695
            C    L A EP ++V S+AG+ E++D+ NEQ +CA V+V R  I+ +GLL+P Y N P + Y++QGRG  G+ FPGC  T
Sbjct:   45 CRFDRLQAFEPLRQVRSQAGIIEYFDEQNEQFRCAGVSVIRRVIEPQGLLLPQYHNAPGLVYILQGRGFTGLTFPGCPAT 124          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: GLYG3_SOYBN (Glycinin G3 OS=Glycine max GN=GY3 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.217e-17
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C IQ LNAL+P  ++ESE G  E W+ NN+  QCA VA+ R  + +  L  P+YTN P+  Y+ QG GI G++FPGC  T
Sbjct:   30 ECQIQRLNALKPDNRIESEGGFIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNAPQEIYIQQGSGIFGMIFPGCPST 110          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: GLYG1_SOYBN (Glycinin G1 OS=Glycine max GN=GY1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.217e-17
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C IQ LNAL+P  ++ESE G+ E W+ NN+  QCA VA+ R  + +  L  P+YTN P+  Y+ QG+GI G+++PGC  T
Sbjct:   30 ECQIQKLNALKPDNRIESEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPST 110          
The following BLAST results are available for this feature:
BLAST of CB305128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
13S3_FAGES3.783e-1954.3213S globulin seed storage protein 3 OS=Fagopyrum e... [more]
13S1_FAGES4.940e-1953.0913S globulin seed storage protein 1 OS=Fagopyrum e... [more]
LEGJ_PEA8.427e-1945.68Legumin J OS=Pisum sativum GN=LEGJ PE=1 SV=1[more]
13S2_FAGES8.427e-1953.0913S globulin seed storage protein 2 OS=Fagopyrum e... [more]
GLUA1_ORYSJ1.101e-1851.85Glutelin type-A 1 OS=Oryza sativa subsp. japonica ... [more]
SSG1_AVESA2.452e-1848.7512S seed storage globulin 1 OS=Avena sativa PE=2 S... [more]
GLUA2_ORYSJ4.182e-1852.50Glutelin type-A 2 OS=Oryza sativa subsp. japonica ... [more]
SSG2_AVESA1.217e-1747.5012S seed storage globulin 2 OS=Avena sativa PE=3 S... [more]
GLYG3_SOYBN1.217e-1748.15Glycinin G3 OS=Glycine max GN=GY3 PE=3 SV=1[more]
GLYG1_SOYBN1.217e-1746.91Glycinin G1 OS=Glycine max GN=GY1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_F01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_F01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305128 ID=CB305128; Name=CB305128; organism=Citrus sinensis; type=EST; length=702bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTNNATTTGAACAAAGAAATATTA
CTTTTTATTTTACTCGCACATTAAACTTACATACAGTCCCGCAGCATTCA
TGTCGTTCATGCCCATTAAGGCTTTTATTCATACATAGTCGTCCCTACCT
CAACTACTTACACTACACTACATAGCTTACTTCCTGATTACGTACCCATT
TACATAATTTCTCTTAGGCTACGGTTAAGCCCCACTGTGACCTAGGCCCT
GGAGTAAACACAGTCAGCTCCTGCCTGTTGTACTTCAACCTCTGAGCTTC
ATCCCTCGACACTTGGAACGAGTTCTGGATAACGTCCAACGGAAGTCCTC
TTAACACCGAAGCCCTTCCGGCCAGCTGGCTTGTCATGGCGACGTCGTTT
GTTGATCTTGGGATTTACTGCTCTGGAACGACTGTTGTTGTTGTGAATCT
TGGAAAGTCTCAGCACATCCGGGGAATACAACTCCATGAATGCCTCTACC
TTGAACAACATAGAAAATCTCAGGAGTGTTGGTGTACGCAGGCACGAGCA
GCCCTCTCTGCTGGATACGGTGGCGAAATACGGCAACATTGGCGCACTGT
AATTGCTCATTGTTCTGGTCCCAGAACTCTGTGACGCCAGCTTCGGATTC
GACCTTCTGTCGGGGCTCAAGGGCGTTGAGGTTCTGGATATTGCACTGGG
TT
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