CB305128

Overview
NameCB305128
Unique NameCB305128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305128_ssr433 microsatellite CB305128_ssr433:433..444. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: LEGA2_PEA (Legumin A2 OS=Pisum sativum GN=LEGA2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C ++ LNALEP  ++ESE G+ E W+ NN+Q +CA VA+ R  +Q   L  P Y+N P+  ++ QG G  G+VFPGC ET
Sbjct:   31 ECQLERLNALEPDNRIESEGGLIETWNPNNKQFRCAGVALSRATLQHNALRRPYYSNAPQEIFIQQGNGYFGMVFPGCPET 111          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: GLYG2_SOYBN (Glycinin G2 OS=Glycine max GN=Gy2 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 39/81 (48.15%), Postives = 53/81 (65.43%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C IQ LNAL+P  ++ESE G  E W+ NN+  QCA VA+ R  + +  L  P+YTN P+  Y+ QG GI G++FPGC  T
Sbjct:   27 ECQIQKLNALKPDNRIESEGGFIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGPQEIYIQQGNGIFGMIFPGCPST 107          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: GLUA3_ORYSJ (Glutelin type-A 3 OS=Oryza sativa subsp. japonica GN=GLUA3 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 42/81 (51.85%), Postives = 52/81 (64.20%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C    L A EP + V S+AG TEF+D +NE  QC  V V R  I+ RGLL+P Y+N   + YV+QGRGI G  FPGC ET
Sbjct:   44 ECRFDRLQAFEPIRTVRSQAGTTEFFDVSNELFQCTGVFVVRRVIEPRGLLLPHYSNGATLVYVIQGRGITGPTFPGCPET 124          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: LEGA_PEA (Legumin A OS=Pisum sativum GN=LEGA PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C ++ L+ALEP  ++ESE G+ E W+ NN+Q +CA VA+ R  +Q+  L  P Y+N P+  ++ QG G  G+VFPGC ET
Sbjct:   30 ECQLERLDALEPDNRIESEGGLIETWNPNNKQFRCAGVALSRATLQRNALRRPYYSNAPQEIFIQQGNGYFGMVFPGCPET 110          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: 12S1_ARATH (12S seed storage protein CRA1 OS=Arabidopsis thaliana GN=CRA1 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.914e-16
Identity = 37/81 (45.68%), Postives = 56/81 (69.14%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C +  LNALEP   ++SEAG  E WD +  QL+C+ V+  R+ I+ +GL +P++ NT ++ +V +GRG+ G V PGCAET
Sbjct:   35 ECQLDQLNALEPSHVLKSEAGRIEVWDHHAPQLRCSGVSFARYIIESKGLYLPSFFNTAKLSFVAKGRGLMGKVIPGCAET 115          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: GLYG5_SOYBN (Glycinin OS=Glycine max PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C + NLNALEP  +VESE G+ E W+  + +LQCA V V +  + + G  +P+Y   P++  VVQG+G  G  FPGC ET
Sbjct:   32 ECQLNNLNALEPDHRVESEGGLIETWNSQHPELQCAGVTVSKRTLNRNGSHLPSYLPYPQMIIVVQGKGAIGFAFPGCPET 112          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: 11S2_SESIN (11S globulin seed storage protein 2 OS=Sesamum indicum PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.537e-15
Identity = 32/81 (39.51%), Postives = 50/81 (61.73%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            QC  Q ++  +P  +++SE G TE WD+  EQ QCA +   R  I+  GL +P Y  +P + Y+ +G+G+  ++ PGCAET
Sbjct:   33 QCRFQRISGAQPSLRIQSEGGTTELWDERQEQFQCAGIVAMRSTIRPNGLSLPNYHPSPRLVYIERGQGLISIMVPGCAET 113          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: CRU2_BRANA (Cruciferin BnC2 OS=Brassica napus GN=BnC2 PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.314e-15
Identity = 35/81 (43.21%), Postives = 55/81 (67.90%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C +  LNALEP   +++EAG  E WD +  QL+C+ V+  R+ I+ +GL +P++ NT  + +V +G+G+ G V PGCAET
Sbjct:   29 ECQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESQGLYLPSFLNTANVSFVAKGQGLMGRVVPGCAET 109          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: 12S2_ARATH (12S seed storage protein CRB OS=Arabidopsis thaliana GN=CRB PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.328e-15
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C +  LNALEP Q ++SE G  E WD +  QL+C+  A  R  I+ +GL +P + N  ++ +VV GRG+ G V PGCAET
Sbjct:   29 ECQLDQLNALEPSQIIKSEGGRIEVWDHHAPQLRCSGFAFERFVIEPQGLFLPTFLNAGKLTFVVHGRGLMGRVIPGCAET 109          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: GLYG4_SOYBN (Glycinin G4 OS=Glycine max GN=GY4 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.645e-14
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C + NLNALEP  +VESE G+ + W+  + +L+CA V V +  + + GL  P+Y+  P +  + QG+G  GV  PGC ET
Sbjct:   31 ECQLNNLNALEPDHRVESEGGLIQTWNSQHPELKCAGVTVSKLTLNRNGLHSPSYSPYPRMIIIAQGKGALGVAIPGCPET 111          
The following BLAST results are available for this feature:
BLAST of CB305128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
LEGA2_PEA1.589e-1746.91Legumin A2 OS=Pisum sativum GN=LEGA2 PE=3 SV=1[more]
GLYG2_SOYBN1.589e-1748.15Glycinin G2 OS=Glycine max GN=Gy2 PE=1 SV=2[more]
GLUA3_ORYSJ2.076e-1751.85Glutelin type-A 3 OS=Oryza sativa subsp. japonica ... [more]
LEGA_PEA4.624e-1745.68Legumin A OS=Pisum sativum GN=LEGA PE=2 SV=1[more]
12S1_ARATH3.914e-1645.6812S seed storage protein CRA1 OS=Arabidopsis thali... [more]
GLYG5_SOYBN5.112e-1645.68Glycinin OS=Glycine max PE=1 SV=1[more]
11S2_SESIN2.537e-1539.5111S globulin seed storage protein 2 OS=Sesamum ind... [more]
CRU2_BRANA3.314e-1543.21Cruciferin BnC2 OS=Brassica napus GN=BnC2 PE=3 SV=... [more]
12S2_ARATH4.328e-1545.6812S seed storage protein CRB OS=Arabidopsis thalia... [more]
GLYG4_SOYBN1.645e-1441.98Glycinin G4 OS=Glycine max GN=GY4 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_F01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_F01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305128 ID=CB305128; Name=CB305128; organism=Citrus sinensis; type=EST; length=702bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTNNATTTGAACAAAGAAATATTA
CTTTTTATTTTACTCGCACATTAAACTTACATACAGTCCCGCAGCATTCA
TGTCGTTCATGCCCATTAAGGCTTTTATTCATACATAGTCGTCCCTACCT
CAACTACTTACACTACACTACATAGCTTACTTCCTGATTACGTACCCATT
TACATAATTTCTCTTAGGCTACGGTTAAGCCCCACTGTGACCTAGGCCCT
GGAGTAAACACAGTCAGCTCCTGCCTGTTGTACTTCAACCTCTGAGCTTC
ATCCCTCGACACTTGGAACGAGTTCTGGATAACGTCCAACGGAAGTCCTC
TTAACACCGAAGCCCTTCCGGCCAGCTGGCTTGTCATGGCGACGTCGTTT
GTTGATCTTGGGATTTACTGCTCTGGAACGACTGTTGTTGTTGTGAATCT
TGGAAAGTCTCAGCACATCCGGGGAATACAACTCCATGAATGCCTCTACC
TTGAACAACATAGAAAATCTCAGGAGTGTTGGTGTACGCAGGCACGAGCA
GCCCTCTCTGCTGGATACGGTGGCGAAATACGGCAACATTGGCGCACTGT
AATTGCTCATTGTTCTGGTCCCAGAACTCTGTGACGCCAGCTTCGGATTC
GACCTTCTGTCGGGGCTCAAGGGCGTTGAGGTTCTGGATATTGCACTGGG
TT
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