CB305128

Overview
NameCB305128
Unique NameCB305128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305128_ssr433 microsatellite CB305128_ssr433:433..444. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: CRU1_BRANA (Cruciferin BnC1 OS=Brassica napus GN=BnC1 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.645e-14
Identity = 34/81 (41.98%), Postives = 55/81 (67.90%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C +  LNALEP   +++EAG  E WD +  QL+C+ V+  R+ I+ +GL +P++ +T ++ +V +G G+ G V PGCAET
Sbjct:   29 ECQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAET 109          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: AHY3_ARAHY (Arachin Ahy-3 OS=Arachis hypogaea PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C  Q LNA  P   +ESE G  E W+ NN++ QCA VA+ R  +++  L  P Y+N P+  ++ QG G  G++FPGC  T
Sbjct:   31 ECQFQRLNAQRPDNCIESEGGYIETWNPNNQEFQCAGVALSRFVLRRNALRRPFYSNAPQEIFIYQGSGYFGLIFPGCPGT 111          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: CRU4_BRANA (Cruciferin CRU4 OS=Brassica napus GN=CRU4 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.392e-13
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C +  LNALEP Q ++SE G  E WD +  QL+C+  A  R  I+ +GL +P + N  ++ +VV G  + G V PGCAET
Sbjct:   28 ECQLDQLNALEPSQIIKSEGGRIEVWDHHAPQLRCSGFAFERFVIEPQGLYLPTFLNAGKLTFVVHGHALMGKVTPGCAET 108          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: LEG_CICAR (Legumin OS=Cicer arietinum GN=leg3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVP-AYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C +++LNAL+P  +++SE G+ E W+ +N+Q  CA VA+ R  +Q   LL    +  +PEIF + QG G  G+VFPGC ET
Sbjct:   30 ECQLEHLNALKPDNRIKSEGGLIETWNPSNKQFACAGVALSRATLQPNSLLQTFLHQRSPEIF-IQQGNGYFGMVFPGCVET 110          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: CRUA_BRANA (Cruciferin OS=Brassica napus GN=CRUA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 32/81 (39.51%), Postives = 52/81 (64.20%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C +  LNALEP   +++EAG  E WD +  QL+C+ V+  R+ I+ +GL +P++ +T  + +V +G G+ G V   CAET
Sbjct:   29 ECQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTARLSFVAKGEGLMGRVVL-CAET 108          
The following BLAST results are available for this feature:
BLAST of CB305128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CRU1_BRANA1.645e-1441.98Cruciferin BnC1 OS=Brassica napus GN=BnC1 PE=3 SV=... [more]
AHY3_ARAHY2.148e-1441.98Arachin Ahy-3 OS=Arachis hypogaea PE=1 SV=1[more]
CRU4_BRANA1.392e-1343.21Cruciferin CRU4 OS=Brassica napus GN=CRU4 PE=1 SV=... [more]
LEG_CICAR3.102e-1343.90Legumin OS=Cicer arietinum GN=leg3 PE=1 SV=1[more]
CRUA_BRANA3.791e-1139.51Cruciferin OS=Brassica napus GN=CRUA PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_F01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_F01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305128 ID=CB305128; Name=CB305128; organism=Citrus sinensis; type=EST; length=702bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTNNATTTGAACAAAGAAATATTA
CTTTTTATTTTACTCGCACATTAAACTTACATACAGTCCCGCAGCATTCA
TGTCGTTCATGCCCATTAAGGCTTTTATTCATACATAGTCGTCCCTACCT
CAACTACTTACACTACACTACATAGCTTACTTCCTGATTACGTACCCATT
TACATAATTTCTCTTAGGCTACGGTTAAGCCCCACTGTGACCTAGGCCCT
GGAGTAAACACAGTCAGCTCCTGCCTGTTGTACTTCAACCTCTGAGCTTC
ATCCCTCGACACTTGGAACGAGTTCTGGATAACGTCCAACGGAAGTCCTC
TTAACACCGAAGCCCTTCCGGCCAGCTGGCTTGTCATGGCGACGTCGTTT
GTTGATCTTGGGATTTACTGCTCTGGAACGACTGTTGTTGTTGTGAATCT
TGGAAAGTCTCAGCACATCCGGGGAATACAACTCCATGAATGCCTCTACC
TTGAACAACATAGAAAATCTCAGGAGTGTTGGTGTACGCAGGCACGAGCA
GCCCTCTCTGCTGGATACGGTGGCGAAATACGGCAACATTGGCGCACTGT
AATTGCTCATTGTTCTGGTCCCAGAACTCTGTGACGCCAGCTTCGGATTC
GACCTTCTGTCGGGGCTCAAGGGCGTTGAGGTTCTGGATATTGCACTGGG
TT
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